View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5112-Insertion-3 (Length: 568)
Name: NF5112-Insertion-3
Description: NF5112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5112-Insertion-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 167 - 568
Target Start/End: Original strand, 31740035 - 31740434
Alignment:
| Q |
167 |
atttaattgtaccatcttaatttttgaagttctttgttttctcatatatgttctttcagttctattatgtgtacactgctacaaattttcgcacattttg |
266 |
Q |
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| T |
31740035 |
atttaattgtaccatcttaatttttgaagtttttt--tttctcatatatgttctttcagttctattatgtttacactgctacaaattttcgcactttttg |
31740132 |
T |
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| Q |
267 |
ttataaaaatacatgtgttcgttatattgtaaatgtggtatctcttgcaatttcaaaaagacttttctctacataatgacataagactatcatggagttg |
366 |
Q |
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| T |
31740133 |
ttataaaaatacatgtgttcgttatattgtaaatgtggcatctcttgcaatttcaaaaagatttttctccacataatgacataagactatcatggagttg |
31740232 |
T |
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| Q |
367 |
agcaaactagtatttgcttctgccatataaaatgacatttgtatatgagtggaaggaataaatggtagccatcaaattaaaaggaagtattgagattaaa |
466 |
Q |
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| T |
31740233 |
agcaaactagtatttgcttctgccatataaaatgacatttgtatatgagttgaaggaataaatggtagccatcaaattaaaaggaagtgttgagattaaa |
31740332 |
T |
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| Q |
467 |
acataactccatcgaatcatgtgtctattctctcactcctttccgtctttttcagcctcaacatttcttcctccctcgcgttccattcttattggttatt |
566 |
Q |
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| T |
31740333 |
acataactccatcgagtcatgtgtctattctctcactcctttccatctttttcagcctcaacatttcttcttccctcgcgttccattcttattggttatt |
31740432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 31739005 - 31739163
Alignment:
| Q |
7 |
aaggtgagggtcatcccacttataaatatattyttaaattatatttcgtttatgtgtgtgattgttaataaacatcttcgtattcgtgataagatattca |
106 |
Q |
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| T |
31739005 |
aaggtgagggccatcccacttataaatatatttttaaattatatttcatttatgtgtgtgacggttaataaacatctttgtattcgtgataagatattca |
31739104 |
T |
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| Q |
107 |
gttcgagtgattcaatattggtgacacgataatatatgattcaatgaatctttgatgca |
165 |
Q |
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| T |
31739105 |
tttcgagtgatttaacattggtgacacgataacatatgattcaatgaatcttagatgca |
31739163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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