View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5112-Insertion-4 (Length: 480)
Name: NF5112-Insertion-4
Description: NF5112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5112-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 8 - 476
Target Start/End: Complemental strand, 15419144 - 15418676
Alignment:
| Q |
8 |
aaagctacatggatggctgatggtactcattggccaggaacttggcaaaattctacacctgatcatgctaaaggtgaccatgctggaatcttgcaggtac |
107 |
Q |
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| T |
15419144 |
aaagctacatggatggctgatggtactcattggccaggaacttggcaaaattctacacctgatcatgctaaaggtgaccatgctggaatcttgcaggtac |
15419045 |
T |
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| Q |
108 |
catttaatttctcctctcatccatcaaannnnnnnnnnnnnnggttcgtaatgttttagttttagtcctgcaaaatttgttcatattgaaatttggtgtt |
207 |
Q |
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| T |
15419044 |
catttaatttctcctctcatccatcaaattttttttgttttttgttcgtaatgttttcgttttagtcctgcaaaatttgttcatattgaaatttggtgtt |
15418945 |
T |
|
| Q |
208 |
tgtttaaagtaaattgtgattgtcatgttttcaacttaacaggtgttgagtaaggtaccagagcatgaccctataatgggccatccagatgagaaaagtc |
307 |
Q |
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| T |
15418944 |
tgtttaaagtaaattgtgattgtcatgttttcaacttaacaggtgatgagtaaggtaccagagcatgaccctataatgggccatccagatgagaaaagtc |
15418845 |
T |
|
| Q |
308 |
tagattttacaggcgtagacattagagttccaatgttcgcatatgtttctcgagagaagcggcccgggtttgaccataacaagaaagcaggagccatgaa |
407 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15418844 |
tagatttcacaggcgtagacattagagttccaatgttcgcatatgtttctcgagagaagcggcccgggtttgaccataacaagaaagcaggagccatgaa |
15418745 |
T |
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| Q |
408 |
ctccatggttcgagcctcagccattttgtccaatggcccttttatactgaatttggattgtgaccacta |
476 |
Q |
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| T |
15418744 |
ctccatggttcgagcctcagccattttgtccaatggcccttttatactgaatttggattgtgaccacta |
15418676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 31748497 - 31748464
Alignment:
| Q |
166 |
gttttagtcctgcaaaatttgttcatattgaaat |
199 |
Q |
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| T |
31748497 |
gttttagtcctgcaaaatttgttcatattgaaat |
31748464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 24640709 - 24640675
Alignment:
| Q |
166 |
gttttagtcctgcaaaatttgttcatattgaaatt |
200 |
Q |
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| T |
24640709 |
gttttagttctgcaaaatttgttcatattgaaatt |
24640675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 52490058 - 52490092
Alignment:
| Q |
166 |
gttttagtcctgcaaaatttgttcatattgaaatt |
200 |
Q |
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| T |
52490058 |
gttttagttctgcaaaatttgttcatattgaaatt |
52490092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 29918756 - 29918711
Alignment:
| Q |
7 |
aaaagctacatggatggctgatggtactcattggccaggaacttgg |
52 |
Q |
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| T |
29918756 |
aaaagcaacatggatggctgatggatctcattggccagggacttgg |
29918711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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