View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5112-Insertion-5 (Length: 346)

Name: NF5112-Insertion-5
Description: NF5112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5112-Insertion-5
NF5112-Insertion-5
[»] chr6 (8 HSPs)
chr6 (6-162)||(14720277-14720433)
chr6 (8-162)||(8990475-8990629)
chr6 (8-162)||(9014922-9015076)
chr6 (166-285)||(8984640-8984746)
chr6 (166-285)||(8990669-8990775)
chr6 (166-285)||(9015116-9015222)
chr6 (166-285)||(14715917-14716023)
chr6 (166-285)||(14720473-14720579)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 14720277 - 14720433
Alignment:
Q  6 caatgtggtgagggagaaacttcaaagtggactcatggaattgttccccatctccaatcaagagcagattatagatatcttgacaaaggcactgcatccg 105  Q
    |||||| |||||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||||  |||||||||||||||||| |||||||||    
T  14720277 caatgtagtgagggagaaacttcaaagtggactcatggaattgtttcctatctctagtcaagagcagattgcagatatcttgacaaaggcgctgcatccg 14720376  T
Q  106 gcaagtttcaataatttggttgccaagctaagtctgctcaacatataccagccttag 162  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  14720377 gcaagtttcaatcatttgattgccaagctaagtctgctcaacatataccagccttag 14720433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 8990475 - 8990629
Alignment:
Q  8 atgtggtgagggagaaacttcaaagtggactcatggaattgttccccatctccaatcaagagcagattatagatatcttgacaaaggcactgcatccggc 107  Q
    |||| |||||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||||  |||||||||||||||||| |||||||||||    
T  8990475 atgtagtgagggagaaacttcaaagtggactcatggaattgtttcctatctctagtcaagagcagattgcagatatcttgacaaaggcgctgcatccggc 8990574  T
Q  108 aagtttcaataatttggttgccaagctaagtctgctcaacatataccagccttag 162  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  8990575 aagtttcaatcatttgattgccaagctaagtctgctcaacatataccagccttag 8990629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 9014922 - 9015076
Alignment:
Q  8 atgtggtgagggagaaacttcaaagtggactcatggaattgttccccatctccaatcaagagcagattatagatatcttgacaaaggcactgcatccggc 107  Q
    |||| |||||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||||  |||||||||||||||||| |||||||||||    
T  9014922 atgtagtgagggagaaacttcaaagtggactcatggaattgtttcctatctctagtcaagagcagattgcagatatcttgacaaaggcgctgcatccggc 9015021  T
Q  108 aagtttcaataatttggttgccaagctaagtctgctcaacatataccagccttag 162  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  9015022 aagtttcaatcatttgattgccaagctaagtctgctcaacatataccagccttag 9015076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 285
Target Start/End: Original strand, 8984640 - 8984746
Alignment:
Q  166 taagtagttagttacaataggattagtcaattagttacacaactaagcaagttgttgtgctgagttgttgaaattgtacacatataaatacacttttgta 265  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||             ||||||||||| | ||||||||||||||||||| ||||    
T  8984640 taagtagttggttacaataggattagtgaattagttacacaactaagca-------------agttgttgaaactatacacatataaatacacttatgta 8984726  T
Q  266 ctcatttctcaataaattga 285  Q
    ||||||||||||| ||||||    
T  8984727 ctcatttctcaattaattga 8984746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 285
Target Start/End: Original strand, 8990669 - 8990775
Alignment:
Q  166 taagtagttagttacaataggattagtcaattagttacacaactaagcaagttgttgtgctgagttgttgaaattgtacacatataaatacacttttgta 265  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||             ||||||||||| | ||||||||||||||||||| ||||    
T  8990669 taagtagttggttacaataggattagtgaattagttacacaactaagca-------------agttgttgaaactatacacatataaatacacttatgta 8990755  T
Q  266 ctcatttctcaataaattga 285  Q
    ||||||||||||| ||||||    
T  8990756 ctcatttctcaattaattga 8990775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 285
Target Start/End: Original strand, 9015116 - 9015222
Alignment:
Q  166 taagtagttagttacaataggattagtcaattagttacacaactaagcaagttgttgtgctgagttgttgaaattgtacacatataaatacacttttgta 265  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||             ||||||||||| | ||||||||||||||||||| ||||    
T  9015116 taagtagttggttacaataggattagtgaattagttacacaactaagca-------------agttgttgaaactatacacatataaatacacttatgta 9015202  T
Q  266 ctcatttctcaataaattga 285  Q
    ||||||||||||| ||||||    
T  9015203 ctcatttctcaattaattga 9015222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 285
Target Start/End: Original strand, 14715917 - 14716023
Alignment:
Q  166 taagtagttagttacaataggattagtcaattagttacacaactaagcaagttgttgtgctgagttgttgaaattgtacacatataaatacacttttgta 265  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||             ||||||||||| | ||||||||||||||||||| ||||    
T  14715917 taagtagttggttacaataggattagtgaattagttacacaactaagca-------------agttgttgaaactatacacatataaatacacttatgta 14716003  T
Q  266 ctcatttctcaataaattga 285  Q
    ||||||||||||| ||||||    
T  14716004 ctcatttctcaattaattga 14716023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 285
Target Start/End: Original strand, 14720473 - 14720579
Alignment:
Q  166 taagtagttagttacaataggattagtcaattagttacacaactaagcaagttgttgtgctgagttgttgaaattgtacacatataaatacacttttgta 265  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||             ||||||||||| | ||||||||||||||||||| ||||    
T  14720473 taagtagttggttacaataggattagtgaattagttacacaactaagca-------------agttgttgaaactatacacatataaatacacttatgta 14720559  T
Q  266 ctcatttctcaataaattga 285  Q
    ||||||||||||| ||||||    
T  14720560 ctcatttctcaattaattga 14720579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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