View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5112-Insertion-6 (Length: 192)
Name: NF5112-Insertion-6
Description: NF5112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5112-Insertion-6 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 135; Significance: 1e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 41326615 - 41326802
Alignment:
| Q |
5 |
acagtggcatcaagtaaaacatcttcgattacagagagatcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggtttaa |
104 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
41326615 |
acagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaaaacttgattctaaaactcttgcttcatcatatggcagtggtttaa |
41326714 |
T |
|
| Q |
105 |
nnnnnnnctaacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcatagcctctatctatttaagctg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||| |
|
|
| T |
41326715 |
tttttttctaacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttcttatagcctctttctattcaagctg |
41326802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 3e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 20909721 - 20909907
Alignment:
| Q |
5 |
acagtggcatcaagtaaaacatcttcgattacagagagatcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggtttaa |
104 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
20909721 |
acagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggcagtggtttaa |
20909820 |
T |
|
| Q |
105 |
nnnnnnnctaacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcatagcctctatctatttaagctg |
192 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |
|
|
| T |
20909821 |
-ttttttctaacttagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcgtagcctctttctattcaagctg |
20909907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 20924169 - 20924355
Alignment:
| Q |
5 |
acagtggcatcaagtaaaacatcttcgattacagagagatcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggtttaa |
104 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
20924169 |
acagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggcagtggtttaa |
20924268 |
T |
|
| Q |
105 |
nnnnnnnctaacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcatagcctctatctatttaagctg |
192 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |
|
|
| T |
20924269 |
-ttttttctaacttagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcgtagcctctttctattcaagctg |
20924355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 27445236 - 27445105
Alignment:
| Q |
43 |
atcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggtttaannnnnnnctaacatagaacaccaaactataagaagatt |
142 |
Q |
| |
|
||||||||||| | ||||| ||||||| |||||| |||||||||| ||||| | |||||| | ||||||||||||||||||| |||||||||| |
|
|
| T |
27445236 |
atcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaattttttttaacatagaacaccaaactctaagaagatt |
27445137 |
T |
|
| Q |
143 |
caaaaagcaagtgaattcaatgttctcatagc |
174 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |
|
|
| T |
27445136 |
caaaaagcaagtgaactcaatgttctcatagc |
27445105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 42312835 - 42313022
Alignment:
| Q |
5 |
acagtggcatcaagtaaaacatcttcgattacagagagatcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggtttaa |
104 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||||| |
|
|
| T |
42312835 |
acagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattctaatactcttgcttcatcgtatggcagtggtttaa |
42312934 |
T |
|
| Q |
105 |
nnnnnnnctaacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcatagcctctatctatttaagctg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| |||||| |||||| |
|
|
| T |
42312935 |
tttttttctaacatagaacaccaaactataagaagatacaaaaagcaagtgaattcaatgtactcgtagcctctttctattcaagctg |
42313022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 184
Target Start/End: Complemental strand, 43227309 - 43227164
Alignment:
| Q |
37 |
agagagatcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggtttaannnnnnnctaacatagaacaccaaactataag |
136 |
Q |
| |
|
||||| ||||||||||| || |||||||||||| ||||||||||||||||| ||||| | | |||| | ||||||||||||||||||| | | |
|
|
| T |
43227309 |
agagatatcttcctgtcaaagaacacttgattctaaaactcttgcttcatcctatggtagtagttttaatttttt-taacatagaacaccaaactcaatg |
43227211 |
T |
|
| Q |
137 |
aagattcaaaaagcaagtgaattcaatgttctcatagcctctatctat |
184 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
43227210 |
a-gattcaaaaatcaagtgaattcaatgttctcatagcatctttctat |
43227164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 9e-35; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 6 - 184
Target Start/End: Complemental strand, 11504630 - 11504451
Alignment:
| Q |
6 |
cagtggcatcaagtaaaacatcttcgattacagagagatcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggtttaan |
105 |
Q |
| |
|
|||||||||||||| | || |||||||||||| ||| |||||| |||| ||||||||||||||| ||||||||||||||||||||||| | |||||| | |
|
|
| T |
11504630 |
cagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtggttttaa |
11504531 |
T |
|
| Q |
106 |
nnnnnnctaacatagaacaccaaactataagaagattcaaaaagcaagtgaatt-caatgttctcatagcctctatctat |
184 |
Q |
| |
|
||||||||||||||||||| || ||| |||||||||||||||||||| | || ||||||||||||| ||||| |
|
|
| T |
11504530 |
atttttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctat |
11504451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 18939779 - 18939865
Alignment:
| Q |
5 |
acagtggcatcaagtaaaacatcttcgattacagagagatcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatg |
92 |
Q |
| |
|
||||| ||||||| ||| || |||||||| | | ||| |||||||| | ||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
18939779 |
acagttgcatcaattaagacgtcttcgat-ataaagatatcttccttccaaacaacacttgattctaaaactcttgattcatcatatg |
18939865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 18939882 - 18939928
Alignment:
| Q |
113 |
taacatagaacaccaaactataagaagattcaaaaagcaagtgaatt |
159 |
Q |
| |
|
||||||||||||| || || |||||| |||||||||||||||||||| |
|
|
| T |
18939882 |
taacatagaacacaaacctctaagaaaattcaaaaagcaagtgaatt |
18939928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 24760573 - 24760519
Alignment:
| Q |
113 |
taacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttc |
167 |
Q |
| |
|
|||||||||||||||||| ||| | || |||||| ||||||||||||||||||| |
|
|
| T |
24760573 |
taacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttc |
24760519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 42122 - 42253
Alignment:
| Q |
43 |
atcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggtttaannnnnnnctaacatagaacaccaaactataagaagatt |
142 |
Q |
| |
|
||||||||||| | ||||| ||||||| |||||| |||||||||| ||||| | |||||| | ||||||||||||||||||| |||||||||| |
|
|
| T |
42122 |
atcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaattttttttaacatagaacaccaaactctaagaagatt |
42221 |
T |
|
| Q |
143 |
caaaaagcaagtgaattcaatgttctcatagc |
174 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |
|
|
| T |
42222 |
caaaaagcaagtgaactcaatgttctcatagc |
42253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 35452 - 35582
Alignment:
| Q |
43 |
atcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggtttaannnnnnnctaacatagaacaccaaactataagaagatt |
142 |
Q |
| |
|
||||||||||| | ||||| ||||||| |||||| |||||||||| ||||| | |||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
35452 |
atcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaatttttt-taacatagaacaccaaactcatagaagatt |
35550 |
T |
|
| Q |
143 |
caaaaagcaagtgaattcaatgttctcatagc |
174 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |
|
|
| T |
35551 |
caaaaagcaagtgaactcaatgttctcatagc |
35582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 52310803 - 52310874
Alignment:
| Q |
113 |
taacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcatagcctctatctat |
184 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| ||||| |
|
|
| T |
52310803 |
taacatagaacaccaaactctaagaagattcaaaaagaaagtgaatttaatgttctcatagcctctttctat |
52310874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 53690094 - 53690023
Alignment:
| Q |
113 |
taacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcatagcctctatctat |
184 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||| ||||| |
|
|
| T |
53690094 |
taacatagaacaccaaactctaagaagattcaaaaagaaagtgaattcaatgttctcatagcatctttctat |
53690023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 52128008 - 52127954
Alignment:
| Q |
113 |
taacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttc |
167 |
Q |
| |
|
|||||||||||||||||| ||| | || |||||| ||||||||||||||||||| |
|
|
| T |
52128008 |
taacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttc |
52127954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 7828265 - 7828311
Alignment:
| Q |
113 |
taacatagaacaccaaactataagaagattcaaaaagcaagtgaatt |
159 |
Q |
| |
|
||||||||||||| || || |||||| |||||||||||||||||||| |
|
|
| T |
7828265 |
taacatagaacacaaacctctaagaaaattcaaaaagcaagtgaatt |
7828311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University