View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5112_high_1 (Length: 701)
Name: NF5112_high_1
Description: NF5112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5112_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 19 - 691
Target Start/End: Original strand, 2483781 - 2484438
Alignment:
| Q |
19 |
gatagtgatttggttttcttaatttgttattttggttttcttagtttgttaaaaatattcagaggcattacaaattgattattgagtttcttcatgtgca |
118 |
Q |
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| T |
2483781 |
gatagtgatttggttttcttaatttgttattttggttttcttagtttgttaaaaatcttcagaggcattacaacttgattattgagtttcttcatgtgca |
2483880 |
T |
|
| Q |
119 |
gcaagtggcatatcttgtgtttgcaattttggtttcttcttaaaataggcaccgcttgcaacatttggattgagaaagttgtcgttttaaataaaaagag |
218 |
Q |
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| T |
2483881 |
gcaagtggcatatcttgaatt-gcaattttggtttcttcttaaaataggcaccgcttgcaacatttggattgagaaagttgtcgttttaaataaaaagag |
2483979 |
T |
|
| Q |
219 |
tttgattgagtatacaatttggaatttgctaccacaattgcatttgaagttattggattaattgagaggcggtttggtaataagaaaaaatattgcgatc |
318 |
Q |
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| T |
2483980 |
tttgattgagtatacaatttggaatttgctaccacaattgcatttgaagttattggattaattgagaggcggtttggtaataagaaaaaatattacgatc |
2484079 |
T |
|
| Q |
319 |
cactcagaatggtttgtttggtgtggttgtgatgcaatttggtgataaattgtatatttagttcgaatgcaaaatgaattgatattgatattattgatgg |
418 |
Q |
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| T |
2484080 |
cactcagaaaggcttgtttggtgtggttgtgatgcaatttggtgataaattgtatatttagttcgaatgcaaaatgaattgatattgatattattgatgg |
2484179 |
T |
|
| Q |
419 |
ggctgtcaaggaagatttggtaaatggtggtttgattaaggttggttattctggttgtactttgaattcggtttggttcatttggtttggtatgttgact |
518 |
Q |
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| T |
2484180 |
ggctgtcaaggaagatttggtaaatggtggtttgattaaggttggttattctggttgtactttgaattc--------------ggtttggtatgttgact |
2484265 |
T |
|
| Q |
519 |
tctcactttgattgtctttctctctttggtttcttcctttctgtttgactgcatatctcccctttatgattgcacttcacttccctctatttgattcgtt |
618 |
Q |
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| T |
2484266 |
tctcactttgattgtctttctctctttggtttcttcctttctgtttgactgcacatctcccctttatgattgcacttcacttccctctatttgattcgtt |
2484365 |
T |
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| Q |
619 |
ctctcttttgatttgtttctttgtttaactagtttctccttcattagtttttctgattgattgtccctctctg |
691 |
Q |
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| T |
2484366 |
ctctcttttgatttgtttgtttgtttaattggtttctccctcattagtttttctcattgattgtccctctctg |
2484438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 163 - 373
Target Start/End: Complemental strand, 17927621 - 17927413
Alignment:
| Q |
163 |
ataggcaccgcttgcaacatttggattgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaattgcatt |
262 |
Q |
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|||| |||| ||||||||||| ||||||||||| |||||||| ||| |||| ||||| ||| ||||||||||||||||||||||||||| | ||| || |
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| T |
17927621 |
atagacaccacttgcaacatt-ggattgagaaaattgtcgtt--aaaaaaaaggagttggatcgagtatacaatttggaatttgctaccatagttgtgtt |
17927525 |
T |
|
| Q |
263 |
tgaagttattggattaattgagaggcggtttggtaataagaa-aaaatattgcgatccactcagaatggtttgtttggtgtggttgtgatgcaatttggt |
361 |
Q |
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| T |
17927524 |
tgaagttattggattaattaagaggcagatcggtaataagaaaaaaatagggagatccactcaattttgtttatttggtgcggttgttatgaaattttat |
17927425 |
T |
|
| Q |
362 |
gataaattgtat |
373 |
Q |
| |
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|||||||||||| |
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| T |
17927424 |
gataaattgtat |
17927413 |
T |
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