View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5112_high_4 (Length: 305)
Name: NF5112_high_4
Description: NF5112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5112_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 43077629 - 43077895
Alignment:
| Q |
19 |
cttaggggcacaggacacactgtatgatcatattggtaggcactattacaaagattgttatattgaaggctcagttgatttcatatttggcaatgctctc |
118 |
Q |
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| T |
43077629 |
cttaggggcacaggacacactgtatgatcatattggtaggcactattataaagattgttatattgaaggctctgttgatttcatatttggcaatgctctc |
43077728 |
T |
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| Q |
119 |
tctctttttgaggtaattaattagtttcattttcattttcaagatgaaatcgttct-aaaatttgactaatgaagttggtaataacatatataggggtgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
43077729 |
tctctttttgaggtaattaattagtttcattttcattttcaagatgaaatcgttctaaaaatttgactaatgaagttggtaataac----ataggggtgt |
43077824 |
T |
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| Q |
218 |
cacgtgcatgcaatagcacaaaatataggagcactaacagcacaaggaaggaacagtttattagaagacac |
288 |
Q |
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| T |
43077825 |
cacgtgcatgcaatagcacaaaatataggagcactaacagcacaaggaaggaacagtttattagaagacac |
43077895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 33965367 - 33965261
Alignment:
| Q |
26 |
gcacaggacacactgtatgatcatattggtaggcactattacaaagattgttatattgaaggctcagttgatttcatatttggcaatgctctctctcttt |
125 |
Q |
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||||| || ||||| ||||||||||||||||| || || || ||||||||||| |||||||| || |||||||||||||||||||||||||| ||||| | |
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| T |
33965367 |
gcacaagatacactttatgatcatattggtagacattactataaagattgttacattgaaggttctgttgatttcatatttggcaatgctctttctctat |
33965268 |
T |
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| Q |
126 |
ttgaggt |
132 |
Q |
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||||||| |
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| T |
33965267 |
ttgaggt |
33965261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 208 - 293
Target Start/End: Complemental strand, 33964273 - 33964188
Alignment:
| Q |
208 |
ataggggtgtcacgtgcatgcaatagcacaaaatataggagcactaacagcacaaggaaggaacagtttattagaagacacaggtt |
293 |
Q |
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|||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| | ||| |||||||||||| |
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| T |
33964273 |
atagggatgtcacgtgcatgcaatagcaagaaatacaggagcactaacagcacaaggaaggagcagtatgttacaagacacaggtt |
33964188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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