View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5112_low_2 (Length: 544)
Name: NF5112_low_2
Description: NF5112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5112_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 12053421 - 12053110
Alignment:
| Q |
19 |
actattatatttaattcttttaactagtgttcgagaacgttggttagcatttcccattctcttattgcaaacaactgaggtataggtgttctcgttttct |
118 |
Q |
| |
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|||| ||||||| ||| ||||||| ||||| | |||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||| || |
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| T |
12053421 |
actactatatttgattattttaaccagtgtccaagaacgatggttagcatttcccattctcttattgcaa-caactaaggtacaggtgttctcttttcct |
12053323 |
T |
|
| Q |
119 |
tcttcctttgtttttcttataagtataaaaatggagttgtcgcgtcctaaccaaagttcattaaaatagggaaaacattgaaaaacccctttnnnnnnnn |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
12053322 |
tcttcctttgtttttcttataagtataaaaatggagttgtcgcgtcctaaccgaagttcattaaaatagggaaaacatcgaaaaacccctttaaaaagaa |
12053223 |
T |
|
| Q |
219 |
nnnnntggccctt-aaagctaaattttagattcataagctgtttatgcttagagaagaatttagcactctacaacatttgttaaaaatggttatctctaa |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
12053222 |
aaaaatggcccttaaaagctaaattttagattcataagctgtttatgcttagagaaggatttagcaccctacaacatttgttaaaactggttatctctaa |
12053123 |
T |
|
| Q |
318 |
ttaattgtgcaag |
330 |
Q |
| |
|
||||||||||||| |
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| T |
12053122 |
ttaattgtgcaag |
12053110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 20590960 - 20591270
Alignment:
| Q |
19 |
actattatatttaattcttttaactagtgttcgagaacgttggttagcatttcccattctcttattgcaaacaactgaggtataggtgttctcgttttct |
118 |
Q |
| |
|
|||| ||||| | ||||||| ||| | ||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||| || |
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| T |
20590960 |
actactatatatgattctttcaaccactgtccgagaacgctggttagcatttcccattctcttattgaaaacaactgaggtacaagtgttctcttttcct |
20591059 |
T |
|
| Q |
119 |
tcttcctttgtttttcttataagtataaaaatggagttgtcgcgtcctaaccaaagttcattaaaatagggaaaacattgaaaaacccctttnnnnnnnn |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
20591060 |
tcttcctttgtttttcttataagtataaaaatggagttgttgcgtcctaaccaaagttcattaaaacagggaaaacatcgaaaaaccccttt-aaaaaga |
20591158 |
T |
|
| Q |
219 |
nnnnntggcccttaaagctaaattttagattcataagctgtttatgcttagagaagaatttagcactctacaacatttgttaaaaatggttatctctaat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
20591159 |
aaaaatggcccttaaagctaaattttagattcataagctgtttatgctcagagaaggatttagcaccctacaacatttgttaaaaatgattatctctaat |
20591258 |
T |
|
| Q |
319 |
taattgtgcaag |
330 |
Q |
| |
|
|||||||||||| |
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|
| T |
20591259 |
taattgtgcaag |
20591270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 20621836 - 20622148
Alignment:
| Q |
19 |
actattatatttaattcttttaactagtgttcgagaacgttggttagcatttcccattctcttattgcaaacaactgaggtataggtgttctcgttttct |
118 |
Q |
| |
|
|||| ||||||| ||| ||||||| |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| | |||||||| ||| || |
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|
| T |
20621836 |
actactatatttgattattttaaccggtgtccgagaacactggttagcatttcccattctcttattgcaa-caactgaggtacatgtgttctcttttcct |
20621934 |
T |
|
| Q |
119 |
tcttcctttgtttttcttataagtataaaaatggagttgtcgcgtcctaaccaaagttcattaaaatagggaaaacattg---aaaaacccctttnnnnn |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | ||||| |||||| |
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| T |
20621935 |
tcttcctttgtttttcttataagtataaaaatggagttgtcgcgtcgtaaccgaagttcattaaaatagggaaaacatcgaaaaaaaaacccttt-aaaa |
20622033 |
T |
|
| Q |
216 |
nnnnnnnntggcccttaaagctaaattttagattcataagctgtttatgcttagagaagaatttagcactctacaacatttgttaaaaatggttatctct |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
20622034 |
agaaaaattggcccttaaagctaaattttagattcataagctgtttatgcttagagaaggatttagcaccctacaacatttgttaaaaatggttatctct |
20622133 |
T |
|
| Q |
316 |
aattaattgtgcaag |
330 |
Q |
| |
|
||||||||||||||| |
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|
| T |
20622134 |
aattaattgtgcaag |
20622148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 67 - 330
Target Start/End: Original strand, 20632308 - 20632569
Alignment:
| Q |
67 |
atttcccattctcttattgcaaacaactgaggtataggtgttctcgttttcttcttcctttgtttttcttataagtataaaaatggagttgtcgcgtcct |
166 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| || ||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20632308 |
atttcccattctcttattgcaa-caactgaggtacagttgttctcttttccatcttccttt-tttttcttataagtataaaaatggagttgtcgcgtcct |
20632405 |
T |
|
| Q |
167 |
aaccaaagttcattaaaatagggaaaacattgaaaaacccctttnnnnnnnnnnnnntggccctt-aaagctaaattttagattcataagctgtttatgc |
265 |
Q |
| |
|
|||| |||||||||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20632406 |
aaccgaagttcattaaaatagggaaaaaatcgaaaaaccccttt-aaaaagaaaaaatggcccttaaaagctaaattttagattcataagctgtttatgc |
20632504 |
T |
|
| Q |
266 |
ttagagaagaatttagcactctacaacatttgttaaaaatggttatctctaattaattgtgcaag |
330 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20632505 |
ttagagaaggatttagcaccctacaacatttgttaaaaatggttatctctaattaattgtgcaag |
20632569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 24 - 329
Target Start/End: Complemental strand, 12057466 - 12057170
Alignment:
| Q |
24 |
tatatttaattcttttaactagtgttcgagaacgttggttagcatttcccattctcttattgcaaacaactgaggtataggtgttctcgttttcttcttc |
123 |
Q |
| |
|
||||||| ||||||||||| ||| | |||||| | | |||||||||| ||||||||||||||| ||||||||||| | |||||||| ||| ||||||| |
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| T |
12057466 |
tatatttgattcttttaaccagtatccgagaatgctagttagcattt---attctcttattgcaa-caactgaggtacatgtgttctcttttccttcttc |
12057371 |
T |
|
| Q |
124 |
ctttgtttttcttataagtataaaaatggagttgtcgcgtcctaaccaaagttcattaaaatagggaaaacattgaaaaacccctttnnnnnnnnnnnnn |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||| || ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
12057370 |
ctttgtttttcttataagtataaaaatggagttgttgtgtccgaa-----gttcattaaaatagggaaaacatcgaaaaacccctttaaaaagaaaaaaa |
12057276 |
T |
|
| Q |
224 |
tggcccttaaa-gctaaattttagattcataagctgtttatgcttagagaagaatttagcactctacaacatttgttaaaaatggttatctctaattaat |
322 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
12057275 |
-ggcccttaaaagctaaattttagattcataagttgtttatgcttagagaaggatttagcaccctacaacatttgttaaaaatggttatctctaattaat |
12057177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 443 - 520
Target Start/End: Complemental strand, 12057029 - 12056952
Alignment:
| Q |
443 |
cattattgtgattgacaaaagtggtttcnnnnnnncatttgtcaaaaataaaagtggtttctttctcttacgtgtctc |
520 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12057029 |
cattattgtgcttgacaaaagtggtttctctttttcatttgtcaaaaataaaagtggtttctttctcttacgtgtctc |
12056952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 443 - 520
Target Start/End: Original strand, 20632711 - 20632788
Alignment:
| Q |
443 |
cattattgtgattgacaaaagtggtttcnnnnnnncatttgtcaaaaataaaagtggtttctttctcttacgtgtctc |
520 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20632711 |
cattattgtgcttgacaaaagtggtttctcattttcatttgtcaaaaataaaagtggtttctttctcttacgtgtctc |
20632788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 443 - 520
Target Start/End: Complemental strand, 12052970 - 12052893
Alignment:
| Q |
443 |
cattattgtgattgacaaaagtggtttcnnnnnnncatttgtcaaaaataaaagtggtttctttctcttacgtgtctc |
520 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
12052970 |
cattattgtgcttgacaaaagtggtttctcattttcatttgtcaaaaataaaagtggtttctttcttttacgtgtctc |
12052893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 443 - 520
Target Start/End: Original strand, 20591457 - 20591534
Alignment:
| Q |
443 |
cattattgtgattgacaaaagtggtttcnnnnnnncatttgtcaaaaataaaagtggtttctttctcttacgtgtctc |
520 |
Q |
| |
|
||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20591457 |
cattattatgcttgacaaaattggtttctttttttcatttgtcaaaaataaaagtggtttctttctcttacgtgtctc |
20591534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 520
Target Start/End: Original strand, 20622298 - 20622364
Alignment:
| Q |
454 |
ttgacaaaagtggtttcnnnnnnncatttgtcaaaaataaaagtggtttctttctcttacgtgtctc |
520 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
20622298 |
ttgacaaaagtggtttctctttttcatttgtcaaaaataaaactggtttctttctcttacgtgtctc |
20622364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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