View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5112_low_3 (Length: 431)

Name: NF5112_low_3
Description: NF5112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5112_low_3
NF5112_low_3
[»] chr1 (7 HSPs)
chr1 (18-424)||(2303577-2303982)
chr1 (33-282)||(34991238-34991479)
chr1 (18-249)||(34984548-34984771)
chr1 (280-424)||(34984892-34985033)
chr1 (33-141)||(34977359-34977467)
chr1 (280-424)||(34977637-34977777)
chr1 (280-367)||(34991583-34991671)
[»] chr5 (2 HSPs)
chr5 (34-247)||(40581917-40582128)
chr5 (280-424)||(40582217-40582361)
[»] chr3 (2 HSPs)
chr3 (35-167)||(22619229-22619360)
chr3 (35-68)||(22123897-22123930)


Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 2303982 - 2303577
Alignment:
Q  18 acattggacacttgtccaacttgaattcaattgttatcgataaaggagcatcgcattctctaaaaaagttcgagttattcaaaatccccaacctcaagaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2303982 acattggacacttgtccaacttgaattcaattgttatcgataaaggagcattgcattctctaaaaaagttcgagttattcaaaatccccaacctcaagaa 2303883  T
Q  118 tgttccttctggaatccaacactttagagaagcttgaatttctcaatgttcggaaagctccccttgcagaatttaatcttagtcaggcaaatcgatccaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  2303882 tgttccttctggaatccaacactttagagaagcttgaatttctcaatgttcggaaagttccccttgcagaatttaatcttagtcatgcaaatcgatccaa 2303783  T
Q  218 aactttaaggactaagggagatagaaatcacatgccgtccaacttacaaaacaggtgaacattttattttgcctcactttacatttcctctggcatatgc 317  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2303782 aactttaaggact-acggagatagaaatcacatgccgtccaacttacaaaacaggtgaacattttattttgcctcactttacatttcctctggcatatgc 2303684  T
Q  318 tttgaattttttgttattctagatcaataattataaggtttttactgtgtgtttgtgtccaaaagaggtttttggttggaatcatttcattctgagtagt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2303683 tttgaattttttgttattctagatcaataattataaggtttttactgtgtgtttgtgtccaaaagaggtttttggttggaatcatttcattctgagcagt 2303584  T
Q  418 ataatct 424  Q
     ||||||    
T  2303583 ctaatct 2303577  T

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Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 33 - 282
Target Start/End: Original strand, 34991238 - 34991479
Alignment:
Q  33 ccaacttgaattcaattgttatcgataaaggagcatcgcattctctaaaaaagttcgagttattcaaaatccccaacctcaagaatgttccttctggaat 132  Q
    ||||| |||||||||||||||| |||||||||||||  ||||||||||||||||| ||||||||| | ||||||||||||||||      ||||||||||    
T  34991238 ccaacatgaattcaattgttattgataaaggagcattacattctctaaaaaagtttgagttattcgagatccccaacctcaaga------cttctggaat 34991331  T
Q  133 ccaacactttagagaagcttgaatttctcaatgttcggaaagctccccttgcagaatttaatcttagtcaggcaaatcgatccaaaactttaaggactaa 232  Q
    ||||||||| ||||||||||||| ||||||||||| || | | ||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||    
T  34991332 ccaacactt-agagaagcttgaagttctcaatgtttgggatgttccccttgcagaatttaatcttagtgaggaaaatcaatccgaaactttaaggactaa 34991430  T
Q  233 gggagatagaaatcacatgccgtccaacttacaaaacaggtgaacatttt 282  Q
     ||||||||||||||||  || ||||| |   | ||||||||||||||||    
T  34991431 -ggagatagaaatcacaaaccatccaaatcggagaacaggtgaacatttt 34991479  T

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Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 34984548 - 34984771
Alignment:
Q  18 acattggacacttgtccaacttgaattcaattgttatcgataaaggagcatcgcattctctaaaaaagttcgagttattcaaaatccccaacctcaagaa 117  Q
    |||||||| |||||  |||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||  ||| |||||||||         
T  34984548 acattggagacttgcgcaacatgaattcaattgttatcgataaaggagcattgcattctctaaaaaagtttgagttattcggaatgcccaacctc----- 34984642  T
Q  118 tgttccttctggaatccaacactttagagaagcttgaatttctcaatgttcggaaagctccccttgcagaatttaatcttagtcaggcaaatcgatccaa 217  Q
     ||||||||||| ||||||||||| ||||||||||||| |||||||| || ||   | |||||||||||||||||||||||||||| |||||| || |||    
T  34984643 -gttccttctgggatccaacactt-agagaagcttgaagttctcaatttttgggctgttccccttgcagaatttaatcttagtcagccaaatcaattcaa 34984740  T
Q  218 aactttaaggactaagggagatagaaatcaca 249  Q
    ||||||||||| |||  |||||||||||||||    
T  34984741 aactttaaggattaa-tgagatagaaatcaca 34984771  T

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Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 280 - 424
Target Start/End: Original strand, 34984892 - 34985033
Alignment:
Q  280 tttattttgcctcactttacatttcctctggcatatgctttgaattttttgttattctagatcaataattataaggtttttactgtgtgtttgtgtccaa 379  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| ||||   ||||| ||      
T  34984892 tttattttgcctcactttacatttcttctggcatatgctttgtattttttgctattctacatcaataattataaggtttttattgtg---ttgtgccctc 34984988  T
Q  380 aagaggtttttggttggaatcatttcattctgagtagtataatct 424  Q
    ||||||||||||||||||||| || ||||||||| ||| ||||||    
T  34984989 aagaggtttttggttggaatccttacattctgagcagtctaatct 34985033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 34977359 - 34977467
Alignment:
Q  33 ccaacttgaattcaattgttatcgataaaggagcatcgcattctctaaaaaagttcgagttattcaaaatccccaacctcaagaatgttccttctggaat 132  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||| |||||||||||||| |||  ||||||||||| ||    
T  34977359 ccaacatgaattcaattgttatcgataaaggagcattgcattctctaaaaaagcttgagttattcgaaatccccaacctcgagacggttccttctgggat 34977458  T
Q  133 ccaacactt 141  Q
    |||||||||    
T  34977459 ccaacactt 34977467  T

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Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 280 - 424
Target Start/End: Original strand, 34977637 - 34977777
Alignment:
Q  280 tttattttgcctcactttacatttcctctggcatatgctttgaattttttgttattctagatcaataattataaggtttttactgtgtgtttgtgtccaa 379  Q
    ||||||||||||||||||||||||| |||||||||||||||   ||||||||||||||| ||||||||||||||| |  ||| ||||   ||||| ||      
T  34977637 tttattttgcctcactttacatttcttctggcatatgcttt-ttttttttgttattctacatcaataattataagatacttattgtg---ttgtgccctc 34977732  T
Q  380 aagaggtttttggttggaatcatttcattctgagtagtataatct 424  Q
    ||||||||||||||||||||| |||||||||||| ||| ||||||    
T  34977733 aagaggtttttggttggaatcctttcattctgagcagtctaatct 34977777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 367
Target Start/End: Original strand, 34991583 - 34991671
Alignment:
Q  280 tttattttgcctcactttacatttcctctggcatatgctttg-aattttttgttattctagatcaataattataaggtttttactgtgt 367  Q
    |||||||||||||||||||  |||| |||||||||| ||||| | |||||| |||||||| || ||||||||||||||||||| |||||    
T  34991583 tttattttgcctcactttatttttcttctggcatattctttgtattttttttttattctacattaataattataaggtttttattgtgt 34991671  T

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Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 34 - 247
Target Start/End: Original strand, 40581917 - 40582128
Alignment:
Q  34 caacttgaattcaattgttatcgataaaggagcatcgcattctctaaaaaagttcgagttattcaaaatccccaacctcaagaatgttccttctggaatc 133  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||  ||| ||||||||| | ||||||||||||||||  ||||||||||| |||    
T  40581917 caacgtgaattcaattgttatcgataaaggagcattgcattctctaaaattgtttgagttattccatatccccaacctcaagacggttccttctgggatc 40582016  T
Q  134 caacactttagagaagcttgaatttctcaatgttcggaaagctccccttgcagaatttaatcttagtcaggcaaatcgatccaaaactttaaggactaag 233  Q
    ||||||  |||||||||||||| ||||  |||||| | | |  | ||||||| ||||||||||||||  |||||||| |||||||||||||| ||||||     
T  40582017 caacac-ctagagaagcttgaagttctacatgttccgtatgaactccttgcataatttaatcttagtgtggcaaatcaatccaaaactttaatgactaa- 40582114  T
Q  234 ggagatagaaatca 247  Q
    ||||||||||||||    
T  40582115 ggagatagaaatca 40582128  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 280 - 424
Target Start/End: Original strand, 40582217 - 40582361
Alignment:
Q  280 tttattttgcctcactttacatttcctctggcatatgctttgaa---ttttttgttattctagatcaataattataaggtttttactgtgtgtttgtgtc 376  Q
    ||||||||||||||||||||||||| |||| || |||||||| |   |||||||||||||||  |||||||||||||||||| || ||||   ||||  |    
T  40582217 tttattttgcctcactttacatttcttctgccacatgctttgtatttttttttgttattctacgtcaataattataaggtttctattgtg---ttgtacc 40582313  T
Q  377 caaaagaggtttttggttggaatcatttcattctgagtagtataatct 424  Q
    |  ||||||||||||||||||||||||||||||| || ||| ||||||    
T  40582314 ctcaagaggtttttggttggaatcatttcattctaagcagtctaatct 40582361  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 22619360 - 22619229
Alignment:
Q  35 aacttgaattcaattgttatcgataaaggagcatcgcattctctaaaaaagttcgagttattcaaaatccccaacctcaagaatgttccttctggaatcc 134  Q
    |||||| |||||||| | ||||| ||||||||    |||||||||||||||||||||||||  |  ||||||||||||||||  |||||   ||| ||||    
T  22619360 aacttgcattcaattttcatcgacaaaggagcgctacattctctaaaaaagttcgagttatctagcatccccaacctcaagacggttccagatggcatcc 22619261  T
Q  135 aacactttagagaagcttgaatttctcaatgtt 167  Q
     |||| ||||| ||||||||| ||||| |||||    
T  22619260 gacac-ttagaaaagcttgaagttctcgatgtt 22619229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 22123897 - 22123930
Alignment:
Q  35 aacttgaattcaattgttatcgataaaggagcat 68  Q
    ||||||||||||||||||||||| ||||||||||    
T  22123897 aacttgaattcaattgttatcgaaaaaggagcat 22123930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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