View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5113-Insertion-1 (Length: 338)
Name: NF5113-Insertion-1
Description: NF5113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5113-Insertion-1 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 33415776 - 33416090
Alignment:
| Q |
9 |
atttttcatattttatataagagggtttaaagtttacctgcacggttaaattgtatatctattaacacctaaaaataatttatgaaataaatttactaca |
108 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33415776 |
atttctcatattttatataggagggtttaaagtttacgtacacggttaaattgtatatctattaacacctaaaaataatttatgaa-taaatttactaca |
33415874 |
T |
|
| Q |
109 |
tggctaagtaatcttgctccatgggaacaactttattctctttgcttcttggctaaatattcttgactaataatttctcacttgaatgctaatttca--- |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33415875 |
tggctaagtaatcttgctccatgggaacaactttattctctttggttcttggctaaatattcttgactaataatttctcacttgaatgctaatttcaacc |
33415974 |
T |
|
| Q |
206 |
---attcacacctcagactacacatcaaccttcatcgtgtttgttattgtagttactagcaagtcaattgaaactgagcacaacttcaatttgtcgataa |
302 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
33415975 |
agtattcacacctc-gatcacacatcaaccttcatcgtatttgttattgtagttactagtaagtcaactgaaactgaacataacttcaatttgtcgataa |
33416073 |
T |
|
| Q |
303 |
ttaccacttttgtcaac |
319 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
33416074 |
ttaccacttttatcaac |
33416090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 37912834 - 37912895
Alignment:
| Q |
277 |
tgagcacaacttcaatttgtcgataattaccacttttgtcaacatatgtgttgggttcctac |
338 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||| | ||||| | |||||| |
|
|
| T |
37912834 |
tgagcacaacttcaatttgtcgatggttaccacttttctcaacatgtttgttgaggtcctac |
37912895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University