View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5113-Insertion-2 (Length: 924)
Name: NF5113-Insertion-2
Description: NF5113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5113-Insertion-2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 797; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 797; E-Value: 0
Query Start/End: Original strand, 8 - 902
Target Start/End: Complemental strand, 53561922 - 53561029
Alignment:
| Q |
8 |
taaacaccctcctctctagttcatgaaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaaccgaaaaagtaccgtcctcttc |
107 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53561922 |
taaacaccctcctctctagttcatcaaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaaccgaaaaagtaccgtcctcttc |
53561823 |
T |
|
| Q |
108 |
caaactccaacgccaatcgtcttcaacatccgaaaacacaaaaccattcaaatcctccaacattgcatcaacaagatcctcctcccacacaaaa-gatcc |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53561822 |
caaactccaacgccaatcgtcttcaacatccgaaaacacaaaaccattcaaatcctccaacattgcatcaacaagatcctcctcccacacaaaaagatcc |
53561723 |
T |
|
| Q |
207 |
cttctccaactaaaatcccaattacctcccaccctgccactcacccgacagtccccaataaaaccctctttttggttagacaaggagaacaatcttggat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53561722 |
cttctccaactaaaatcccaattacctcccaccccgccactcacccgacagtccccaataaaaccctctttttggttagacaaggagaacaatcttggat |
53561623 |
T |
|
| Q |
307 |
atttagccggaaaagaactattacccctccacacgtcattccaaaacctcgtaaccctcccgttgccaacattccaagacacctccgagttaaaccaatt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
53561622 |
atttagccggaaaagaactattacccctccacacgtcattccaaaacctcgtaaccctcccgttgccaacattcctagacacctccgagttaaaccaatt |
53561523 |
T |
|
| Q |
407 |
tcaccctcctccatcgcccaacttagttacatctttccaccaccgcgaagcataggttgggcacacatagc-ccccgggcaacaaagatgcaccaaacat |
505 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
53561522 |
tgaccctcctccatcgcccaacttagttacatctttccaccaccgcgaagcataggttgggcacacatagccccccgggcaacaaagatgcacc-aacat |
53561424 |
T |
|
| Q |
506 |
cctcaccatatttctcccttaaaacatccttccacatggagccacctttttgcaacatcctccacctccatttcgctagaaggcttaagttaacaacatt |
605 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
53561423 |
cctcaccatatttctccctcaaaacatccttccacatggagccacctttttgcaacatcctccacctccatttcgctagaaggcttaagttaacaatatt |
53561324 |
T |
|
| Q |
606 |
gacatctctcacacccaagcctccattatctttcgggttgacacaccaccttccacttcgccaaactaattctcctccctccctccacacctccccaaag |
705 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53561323 |
gacatccctcacccccaagcctccattatctttc-ggttgacacaccaccttccacttcaccaaactaattctcctccctccctccacacctccccaaag |
53561225 |
T |
|
| Q |
706 |
gaattccctttgaattctcaccaaattccgccggactttagatggcattctcataaaggacaagtaataaataggaatgaaattcaacaccgaattgaga |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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|
| T |
53561224 |
gaattccctttgaattctcaccaaattccgccggactttagatggcattctcataaaggacaagtaataaatagaaatggaattcaacaccgaattgaga |
53561125 |
T |
|
| Q |
806 |
agcaccactctaccaccaagacttatgaacttattcccccaactattcaatctatttgttaaggaatcggcaaaaaggatcccaagttgccactctt |
902 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |
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|
| T |
53561124 |
agcaccactctaccaccaagacttatgaacttattcccccaactattcaatctatttgtt-aggaatcacaaaagaggatcccaagttgccactctt |
53561029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 3e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 51 - 866
Target Start/End: Complemental strand, 4903435 - 4902621
Alignment:
| Q |
51 |
catcaatgtttccaatttggaatacatagatttaaccgaaaaagtaccgtcctcttccaaactccaacgccaatcgtcttcaacatccgaaaacacaaaa |
150 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |||||||||| ||| ||||| ||||| |||||| |||||| || | | || || ||||| |
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|
| T |
4903435 |
catcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaagacaaac |
4903336 |
T |
|
| Q |
151 |
ccattcaaatcctccaacattgcatcaacaagatcctcctcccacacaaaa-gatcccttctccaactaaaatcccaattacctcccaccctgccactca |
249 |
Q |
| |
|
|||||||||||||| | || ||| || ||| ||||||||||||||| | |||||||||||||||||| |||| |||||| | | | | ||| |
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|
| T |
4903335 |
ccattcaaatcctcgagcaaatcatgaagaagtaaatcctcccacacaaaaaggtcccttctccaactaaaagcccaccaacctccaagaccgtctctct |
4903236 |
T |
|
| Q |
250 |
cccgacagtccccaataaaaccctctttttggttagacaaggagaacaatcttggatatttagccggaaaagaactattacccctccacacgtcattcca |
349 |
Q |
| |
|
||| | || |||||||| ||||||| || ||||||||||||||||||||||||||||| || || |||||||||||| |||| | ||| ||| |
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|
| T |
4903235 |
cccataaatcttcaataaaagcctctttctgattagacaaggagaacaatcttggatatttcaccctaacggaactattacccgtccaaaacccatccca |
4903136 |
T |
|
| Q |
350 |
aaacctcgtaaccctcccgttgccaacattccaagacacctccgagttaaaccaatttcaccctcctccatcgcccaacttagttacatctttccaccac |
449 |
Q |
| |
|
||| |||||| || ||| || ||||| ||| |||||||||||||||||||||| ||| ||||||| ||||| || ||||| ||||||||| |
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|
| T |
4903135 |
aaagctcgtagtccgcccattaccaaccctccgcaacacctccgagttaaaccaattaagcccatctccatctcccaagttgacaacatccttccaccac |
4903036 |
T |
|
| Q |
450 |
cgcgaagcataggttgggcacacatagcccccgggcaacaaagatgcaccaaacatcctcaccatatttctcccttaaaacatccttccacatggagcca |
549 |
Q |
| |
|
|| || |||||| | || || | ||||| || |||| | |||||| || ||| ||||||||||||||| | ||| |||||||| | || | |
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|
| T |
4903035 |
cgagatgcatagttaggacaattagcaccccccaataataaaggttcaccaa-caccctgaccatatttctccctaagaacctccttccaaaacgaactc |
4902937 |
T |
|
| Q |
550 |
cctttttgcaacatcctccacctccatttcgctagaaggcttaagttaacaacattgacatctctcacacccaagcctccattatctttcgggttgacac |
649 |
Q |
| |
|
|||| ||||| | |||||||| |||||| |||| |||||||||||| || || | | ||| ||||| ||||| ||||||| |||| ||||||||| |
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|
| T |
4902936 |
ccttcatgcaaaagcctccaccgccattttgctaaaaggcttaagttcaccaccctaatatccctcacccccaaacctccatccccttt-aggttgacac |
4902838 |
T |
|
| Q |
650 |
accaccttccacttcgccaaactaattctcctccctccctccacacctccccaaaggaattccctttgaattctcaccaaattccgccggactttagatg |
749 |
Q |
| |
|
||||||||||||||| || || |||| | ||| || ||||||||||| ||||||||||| |||||||||||||||||| |||| || |||||||| | |
|
|
| T |
4902837 |
accaccttccacttcacccaattaatgcccctaccaccctccacaccaccccaaaggaactccctttgaattctcacctctttcctccacactttagaag |
4902738 |
T |
|
| Q |
750 |
gcattctcataaaggacaagtaataaataggaatgaaattcaacaccgaattgagaagcaccactctaccaccaagacttatgaacttattcccccaact |
849 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||||| | |||||||||||||| || ||||||||||| |||||||| || ||||| |||||||||||||| |
|
|
| T |
4902737 |
gcattttcataaatgacaaataataaataggaatggagttcaacaccgaattaagcagcaccactctcccaccaaggctaatgaatttattcccccaact |
4902638 |
T |
|
| Q |
850 |
attcaatctatttgtta |
866 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
4902637 |
aaacaatctatttgtta |
4902621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 669 - 723
Target Start/End: Original strand, 13959929 - 13959983
Alignment:
| Q |
669 |
aactaattctcctccctccctccacacctccccaaaggaattccctttgaattct |
723 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||| | |||||||| ||||| |
|
|
| T |
13959929 |
aactaattttcctccctccctcaacacctccccaaagaagctccctttggattct |
13959983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 1556915 - 1556846
Alignment:
| Q |
47 |
tcaccatcaatgtttccaatttggaatacatagatttaaccgaaaaagtaccgtcctcttccaaactcca |
116 |
Q |
| |
|
|||||||| |||||||||||| |||||||| ||||| ||||| |||| |||||||| ||||| ||||| |
|
|
| T |
1556915 |
tcaccatccttgtttccaattttgaatacattgatttgaccgagaaagctccgtcctcctccaacctcca |
1556846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 22154312 - 22154410
Alignment:
| Q |
261 |
ccaataaaaccctctttttggttagacaaggagaacaatcttggatatttagccggaaaagaactattacccctccacacgtcattccaaaacctcgta |
359 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||||||||||| || ||| |||||||||| | |||| || ||||| ||||| |||||| |
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|
| T |
22154312 |
ccaataaaagcctctttctgattagacaaggagaacaatcttggatatttcaccctaaaggaactattacacatccaaacctcatttcaaaagctcgta |
22154410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 22210227 - 22210325
Alignment:
| Q |
261 |
ccaataaaaccctctttttggttagacaaggagaacaatcttggatatttagccggaaaagaactattacccctccacacgtcattccaaaacctcgta |
359 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||||||||||| || ||| |||||||||| | |||| || ||||| ||||| |||||| |
|
|
| T |
22210227 |
ccaataaaagcctctttctgattagacaaggagaacaatcttggatatttcaccctaaaggaactattacacatccaaacctcatttcaaaagctcgta |
22210325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 645 - 728
Target Start/End: Complemental strand, 22196148 - 22196065
Alignment:
| Q |
645 |
gacacaccaccttccacttcgccaaactaattctcctccctccctccacacctccccaaaggaattccctttgaattctcacca |
728 |
Q |
| |
|
|||||||||||||||| | || ||||||| ||||||||||||| | ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
22196148 |
gacacaccaccttccaactaacccaactaatcttcctccctccctctaaaccaccccaaaggaattccctttgaattctaacca |
22196065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 641 - 723
Target Start/End: Complemental strand, 47326804 - 47326722
Alignment:
| Q |
641 |
ggttgacacaccaccttccacttcgccaaactaattctcctccctccctccacacctccccaaaggaattccctttgaattct |
723 |
Q |
| |
|
|||||||||||||| |||||||| || | |||||| |||| |||||| || |||||||||||||||| |||||||||||||| |
|
|
| T |
47326804 |
ggttgacacaccacactccacttcacccatctaattttcctacctcccgccgcacctccccaaaggaactccctttgaattct |
47326722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 814 - 860
Target Start/End: Original strand, 21943340 - 21943386
Alignment:
| Q |
814 |
tctaccaccaagacttatgaacttattcccccaactattcaatctat |
860 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
21943340 |
tctaccaccaagactaatgaacttattaccccaattattcaatctat |
21943386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 690 - 726
Target Start/End: Complemental strand, 28570722 - 28570686
Alignment:
| Q |
690 |
ccacacctccccaaaggaattccctttgaattctcac |
726 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28570722 |
ccacacctccccaaaggaattctctttgaattctcac |
28570686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 641 - 728
Target Start/End: Complemental strand, 20793505 - 20793418
Alignment:
| Q |
641 |
ggttgacacaccaccttccacttcgccaaactaattctcctccctccctccacacctccccaaaggaattccctttgaattctcacca |
728 |
Q |
| |
|
|||||||||||||||||||| | || ||||||| ||||||||||||| | ||| |||||||| ||||| ||||||||||| |||| |
|
|
| T |
20793505 |
ggttgacacaccaccttccaactaacccaactaatcttcctccctccctctaaaccaccccaaagaaattctctttgaattctaacca |
20793418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 672 - 720
Target Start/End: Complemental strand, 10429470 - 10429422
Alignment:
| Q |
672 |
taattctcctccctccctccacacctccccaaaggaattccctttgaat |
720 |
Q |
| |
|
||||| |||| |||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
10429470 |
taattttccttcctcccgccacacctccccaaaggaactccctttgaat |
10429422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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