View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5113-Insertion-3 (Length: 881)
Name: NF5113-Insertion-3
Description: NF5113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5113-Insertion-3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 272 - 658
Target Start/End: Original strand, 32994370 - 32994751
Alignment:
| Q |
272 |
ttttggaattttgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttgagtatttcctcttctaagaatatcaatgtcatttt |
371 |
Q |
| |
|
|||| |||| || |||||| |||||| ||||| ||||||||||| |||||||||| |||||||||| |||| |||||| || || ||||||| |
|
|
| T |
32994370 |
ttttagaatattaataatgaaggggattaggtcgatacaaccctacaatttcaagcacaaacttgattattacctctt-------tagtaacatcatttt |
32994462 |
T |
|
| Q |
372 |
cataaaataaatgcttcaaatggga---aataatattaacatagctatagcaaattaacaatttgttactaaagatgatgctttttgaaagagacttttc |
468 |
Q |
| |
|
|||||||| | | ||||||||||| || ||||||||||||| |||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32994463 |
cataaaatttaagtttcaaatgggagaaaaaaatattaacatagttatagcaaattaacaact-gttactaaagatgatgctttttgacagagacttttc |
32994561 |
T |
|
| Q |
469 |
acatgtgaccaatatgctcataaggttgccctatcaaatatgcaatggagggagaaattgccaagattacataccagatatttatcatcacgtaatattc |
568 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32994562 |
acatgtgaccaatatgctgataaggttgccctatcaaatatgcaatggagggagaaattgccaagattacataccagatatttatcatcacgtaatattc |
32994661 |
T |
|
| Q |
569 |
catgtcacctttgattattttgatgcatacaacatttannnnnnngcaaatcaattgcaatgtaatgttactaattcaatgctgtttttc |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32994662 |
catgtcacctttgattattttgatgcatacaacatttatttttttgcaaatcaattgcaatgtaatgttactaattcaatgctgtttttc |
32994751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 32993899 - 32994115
Alignment:
| Q |
7 |
acatttttcagtgtgatggatgacacaaaagaatacatatgcagagctatggtcactgtagttgatcatcttgggaatgtttcctctaatcttgaaggcc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32993899 |
acatttttcagtgtgatggatgacacaaaagaatacatatgcagagctatggttactgtagttgatcatcttgggaatgtttcctctaatcttgaaggtc |
32993998 |
T |
|
| Q |
107 |
ttatttctcataaaaattcattttctgatgctgagatacgaattcagtgcctcacacaagttagtgctattacttgcataaattcacttatatgcataac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32993999 |
ttatttctcataaaaattcattttctgatgctgagatacgaattcagtgcctcacacaagttagtgctattacttgcataaattcacttatatgcacaat |
32994098 |
T |
|
| Q |
207 |
tatatgttatctcatta |
223 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
32994099 |
tatatgttatatcatta |
32994115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 681 - 787
Target Start/End: Original strand, 32994744 - 32994850
Alignment:
| Q |
681 |
tgtttttcatgatcagctcctatccttgagagatcaaagagtgacaaattaaggtacctcttggttcctaaatactctcatgaatctgattatgagcaat |
780 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32994744 |
tgtttttcatgatcagctcctatccttgagagatcaaagagtgacaaattaaggtacctcttggttcctcaatactctcatgaatctgattatgagcaat |
32994843 |
T |
|
| Q |
781 |
gtttcac |
787 |
Q |
| |
|
||||||| |
|
|
| T |
32994844 |
gtttcac |
32994850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 336
Target Start/End: Complemental strand, 34620535 - 34620482
Alignment:
| Q |
283 |
tgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttg |
336 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| |||||||||| || |||||| |
|
|
| T |
34620535 |
tgatgatgtaggggactaggttgatataaccctacaatttcaaggactaacttg |
34620482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 336
Target Start/End: Complemental strand, 34747972 - 34747919
Alignment:
| Q |
283 |
tgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttg |
336 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| |||||||||| || |||||| |
|
|
| T |
34747972 |
tgatgatgtaggggactaggttgatataaccctacaatttcaaggactaacttg |
34747919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 283 - 343
Target Start/End: Complemental strand, 34592399 - 34592339
Alignment:
| Q |
283 |
tgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttgagtattt |
343 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| |||||||||| | |||||| |||||| |
|
|
| T |
34592399 |
tgataatgtaggggactaggttgatatagccctacaatttcaaggagtaacttgggtattt |
34592339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 343
Target Start/End: Original strand, 5854652 - 5854723
Alignment:
| Q |
272 |
ttttggaattttgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttgagtattt |
343 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||| ||||| ||| ||| |||||| || |||||||| |||| |
|
|
| T |
5854652 |
ttttagaatattgataatgtaagggactaggttgttacaatcctacaacttcaaggaccaacttgagaattt |
5854723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 5361297 - 5361351
Alignment:
| Q |
282 |
ttgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttg |
336 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| ||||||||| |||||||||| |
|
|
| T |
5361297 |
ttgataatgtaggggactaaattgatacattcctacaatttcaattacaaacttg |
5361351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University