View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5113_high_2 (Length: 502)

Name: NF5113_high_2
Description: NF5113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5113_high_2
NF5113_high_2
[»] chr4 (6 HSPs)
chr4 (87-491)||(12141486-12141875)
chr4 (131-201)||(45036764-45036834)
chr4 (129-202)||(4341976-4342050)
chr4 (129-208)||(43698764-43698841)
chr4 (129-203)||(55264888-55264962)
chr4 (129-197)||(2113416-2113484)
[»] chr1 (5 HSPs)
chr1 (129-202)||(23802600-23802673)
chr1 (130-200)||(5346039-5346109)
chr1 (152-202)||(4524603-4524653)
chr1 (129-191)||(3889965-3890029)
chr1 (129-197)||(6886583-6886651)
[»] chr8 (3 HSPs)
chr8 (283-436)||(9036483-9036636)
chr8 (129-197)||(38753439-38753507)
chr8 (127-203)||(34678415-34678491)
[»] chr2 (7 HSPs)
chr2 (129-200)||(1001375-1001446)
chr2 (129-200)||(16389466-16389537)
chr2 (130-188)||(14433831-14433889)
chr2 (143-196)||(8686901-8686954)
chr2 (133-197)||(8083816-8083880)
chr2 (132-191)||(11814069-11814128)
chr2 (152-200)||(32484062-32484110)
[»] chr3 (4 HSPs)
chr3 (127-188)||(26609795-26609856)
chr3 (129-203)||(47190181-47190255)
chr3 (283-440)||(42251532-42251689)
chr3 (138-192)||(8167458-8167512)
[»] chr7 (4 HSPs)
chr7 (130-197)||(786218-786285)
chr7 (129-202)||(40773411-40773484)
chr7 (129-197)||(31311971-31312038)
chr7 (127-174)||(39760249-39760296)
[»] chr5 (5 HSPs)
chr5 (129-184)||(7471454-7471509)
chr5 (129-202)||(21144682-21144755)
chr5 (130-203)||(27633669-27633740)
chr5 (143-195)||(15925888-15925940)
chr5 (278-445)||(26613474-26613641)
[»] chr6 (2 HSPs)
chr6 (132-202)||(22719342-22719412)
chr6 (134-195)||(22712209-22712270)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 87 - 491
Target Start/End: Complemental strand, 12141875 - 12141486
Alignment:
Q  87 catacataaacttgatcatttagatcaatccttctgataagtctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcgg 186  Q
    ||||||||||||||||||||||||||||||||            ||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||    
T  12141875 catacataaacttgatcatttagatcaatcct------------gtctcccgagaagttacttggttgagagtatctctcttcaacctcgagaaactcgg 12141788  T
Q  187 ttcgagacccggcaccatagatcaatccttctaatatatagaataaaaccatgataatgataaagaaattcaaatatagagagaagaagatagacataca 286  Q
    || |||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||   ||||||||||    
T  12141787 tttgagacccggcaccaaagatcaatccttctaatatatagaattaaaacatgataatgataaagaaattaaaatatagagagaaga---tagacataca 12141691  T
Q  287 aatccatagcctttggatcttccagtggctttgtcagtgataacaacagcttccaagatctcaccaaattgctcaaaatacttcttcatagtctcttttt 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12141690 aatccatagcctttggatcttccagtggctttgtcagtgataacaacagcttccaagatctcaccaaattgctcaaaatacttcttcatagtctcttttt 12141591  T
Q  387 gagtttcccaagccaatcctccaacaaaaactttggtgtaagttgtgtcaccaaattgtcctgccaaattaattggagtcatgttgagtttccttgatga 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12141590 gagtttcccaagccaatcctccaacaaaaactttggtgtaagttgtgtcaccaaattgtcctgccaaattaattggagtcatgttgagtttccttgatga 12141491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 45036834 - 45036764
Alignment:
Q  131 gtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccggcac 201  Q
    ||||||||||| ||||| || |||||||| |||||||||||||||| |||||||||||||||||| |||||    
T  45036834 gtctcccgagaagtcacatggttgagagtttctctcttcaaccttgtgaaactcggttcgagacctggcac 45036764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 4342050 - 4341976
Alignment:
Q  129 ctgtctcccgagaggtc-acttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccggcacc 202  Q
    ||||||||||||| ||| || || ||||||| | ||||||||||||| |||||||||||||| ||||||||||||    
T  4342050 ctgtctcccgagaagtccacgtggttgagagaaactctcttcaacctcgagaaactcggttcaagacccggcacc 4341976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 43698764 - 43698841
Alignment:
Q  129 ctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccggcaccatagat 208  Q
    ||||||||||||| |||||||| |||||| |  |||||||||||||  ||||||| ||||| ||||||||||||| ||||    
T  43698764 ctgtctcccgagaagtcacttggttgagatt--ctctcttcaacctcaagaaacttggttcaagacccggcaccagagat 43698841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 55264888 - 55264962
Alignment:
Q  129 ctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccggcacca 203  Q
    |||| |||||||| |||| ||| ||||||| | |||||||||||||  || ||||||||||||||| || |||||    
T  55264888 ctgtatcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggttcgagactcgacacca 55264962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 2113484 - 2113416
Alignment:
Q  129 ctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccg 197  Q
    ||||||||||||| |||| ||| | |||||| ||| ||||||| ||||| ||| |||||| ||||||||    
T  2113484 ctgtctcccgagaagtcatttggtagagagtttctatcttcaatcttgaaaaagtcggtttgagacccg 2113416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 23802673 - 23802600
Alignment:
Q  129 ctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccggcacc 202  Q
    ||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  23802673 ctgtctcccgagaagtcacttggttgagagtttctctcttcaacctcgagaaactcggttcgagacccggcacc 23802600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 5346109 - 5346039
Alignment:
Q  130 tgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccggca 200  Q
    |||||||||||| |||||||| |||||||| |||||||||||| ||||| |||||||||||||| ||||||    
T  5346109 tgtctcccgagaagtcacttggttgagagtttctctcttcaactttgaggaactcggttcgagaaccggca 5346039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 4524603 - 4524653
Alignment:
Q  152 ttgagagtatctctcttcaaccttgagaaactcggttcgagacccggcacc 202  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  4524603 ttgagagtttctctcttcaaccttaagaaactcggttcgaaacccgacacc 4524653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 3890029 - 3889965
Alignment:
Q  129 ctgtctcccgagaggtcacttgattgagag--tatctctcttcaaccttgagaaactcggttcga 191  Q
    ||||||||||||| || ||||| |||||||  | | |||||||||||||||||||||||||||||    
T  3890029 ctgtctcccgagaagtaacttggttgagagagtttatctcttcaaccttgagaaactcggttcga 3889965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 6886583 - 6886651
Alignment:
Q  129 ctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccg 197  Q
    ||||||||||||   ||||||| |||| ||| |||||||||||||| ||||||||||||| || |||||    
T  6886583 ctgtctcccgaggtatcacttggttgaaagtttctctcttcaacctcgagaaactcggtttgaaacccg 6886651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 283 - 436
Target Start/End: Complemental strand, 9036636 - 9036483
Alignment:
Q  283 tacaaatccatagcctttggatcttccagtggctttgtcagtgataacaacagcttccaagatctcaccaaattgctcaaaatacttcttcatagtctct 382  Q
    |||||| ||||| ||||| |||||||||||    || |||||||||||||||||||| |||||||| |||||||| ||||||||| |  |||| || ||     
T  9036636 tacaaaaccataacctttagatcttccagtatacttatcagtgataacaacagcttctaagatctctccaaattgttcaaaatacattctcattgtttcc 9036537  T
Q  383 ttttgagtttcccaagccaatcctccaacaaaaactttggtgtaagttgtgtca 436  Q
     |||||||||||||||| || ||||||||||| | ||||||  | |||||||||    
T  9036536 ctttgagtttcccaagctaaccctccaacaaataatttggtaaatgttgtgtca 9036483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 38753507 - 38753439
Alignment:
Q  129 ctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccg 197  Q
    |||||||| ||||| | ||||| |||||||||||||||||||||||||||| |||||||| ||||||||    
T  38753507 ctgtctcctgagagattacttggttgagagtatctctcttcaaccttgagatactcggttagagacccg 38753439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 34678491 - 34678415
Alignment:
Q  127 gtctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccggcacca 203  Q
    ||||||||||||| |  ||||||  |||||||| |||||||||||| ||||| |||| |||| |||||||| |||||    
T  34678491 gtctgtctcccgaaaaatcacttagttgagagtttctctcttcaactttgaggaacttggttggagacccgacacca 34678415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 1001375 - 1001446
Alignment:
Q  129 ctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccggca 200  Q
    |||||| |||| |||||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||    
T  1001375 ctgtcttccgaaaggtcacttggttgagaatttctctcttcaacctcgagaaactcggttcgagacccggca 1001446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 16389466 - 16389537
Alignment:
Q  129 ctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccggca 200  Q
    ||||||||||||| |||||||| |||| ||| |||||||||||||  ||||||||||||| |||||||||||    
T  16389466 ctgtctcccgagaagtcacttggttgatagtttctctcttcaaccccgagaaactcggtttgagacccggca 16389537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 14433831 - 14433889
Alignment:
Q  130 tgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggtt 188  Q
    ||||||| |||| |||||||| |||||||| |||||||||||||| |||||||||||||    
T  14433831 tgtctcctgagaagtcacttggttgagagtttctctcttcaacctcgagaaactcggtt 14433889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 8686954 - 8686901
Alignment:
Q  143 gtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagaccc 196  Q
    |||||||| |||||||| |||||||||| ||| |||||||||||||||||||||    
T  8686954 gtcacttggttgagagtttctctcttcatcctcgagaaactcggttcgagaccc 8686901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 8083880 - 8083816
Alignment:
Q  133 ctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccg 197  Q
    ||||||||| ||||| |  |||||||| |||||||| ||||||||||||||||||| ||||||||    
T  8083880 ctcccgagaagtcacgtagttgagagtttctctctttaaccttgagaaactcggtttgagacccg 8083816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 11814128 - 11814069
Alignment:
Q  132 tctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcga 191  Q
    |||| |||||||||| ||| |||||||| |||||||||||||| ||||||||| ||||||    
T  11814128 tctcacgagaggtcatttggttgagagtttctctcttcaacctcgagaaactcagttcga 11814069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 32484110 - 32484062
Alignment:
Q  152 ttgagagtatctctcttcaaccttgagaaactcggttcgagacccggca 200  Q
    |||||||| |||||||||||||| ||||||||||||| |||||| ||||    
T  32484110 ttgagagtttctctcttcaacctcgagaaactcggtttgagacctggca 32484062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 26609795 - 26609856
Alignment:
Q  127 gtctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggtt 188  Q
    ||||||||||||||| |||||| | |||||||| ||||||||||| ||||||||||||||||    
T  26609795 gtctgtctcccgagaagtcactaggttgagagtttctctcttcaatcttgagaaactcggtt 26609856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 47190181 - 47190255
Alignment:
Q  129 ctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccggcacca 203  Q
    |||||| || |||||||| ||| |||||||| |||||||||||||| |||||||||||||| |  ||||||||||    
T  47190181 ctgtcttccaagaggtcatttggttgagagtttctctcttcaacctcgagaaactcggttcaaatcccggcacca 47190255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 440
Target Start/End: Complemental strand, 42251689 - 42251532
Alignment:
Q  283 tacaaatccatagcctttggatcttccagtggctttgtcagtgataacaacagcttccaagatctcaccaaattgctcaaaatacttcttcatagtctct 382  Q
    |||||| ||||| ||||| ||| ||||||||| | |||||||||| ||||||||||| || || |||||||| || ||||| ||    || |  || |||    
T  42251689 tacaaagccatatccttttgattttccagtggttctgtcagtgatgacaacagcttctaaaatatcaccaaactgatcaaagtaacgtttgagtgtgtct 42251590  T
Q  383 ttttgagtttcccaagccaatcctccaacaaaaactttggtgtaagttgtgtcaccaa 440  Q
     |||  || |||||||| || |||||||||||||  || || ||||||||||||||||    
T  42251589 cttttggtctcccaagctaaccctccaacaaaaatcttcgtataagttgtgtcaccaa 42251532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 8167458 - 8167512
Alignment:
Q  138 gagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgag 192  Q
    ||||||||||||| |||||||  |||||||||||||| |||| || |||||||||    
T  8167458 gagaggtcacttggttgagagattctctcttcaacctcgagatacacggttcgag 8167512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 786218 - 786285
Alignment:
Q  130 tgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccg 197  Q
    |||||||  |||||| ||||| |||||||| || ||||||||||||||||||||||||| ||||||||    
T  786218 tgtctcctaagaggttacttgtttgagagtttccctcttcaaccttgagaaactcggtttgagacccg 786285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 40773484 - 40773411
Alignment:
Q  129 ctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccggcacc 202  Q
    ||||||||||||| ||||| || ||||||| | |||||||| |||| ||| |||| ||||||||||||||||||    
T  40773484 ctgtctcccgagaagtcacgtggttgagagaaactctcttcgacctcgaggaacttggttcgagacccggcacc 40773411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 31311971 - 31312038
Alignment:
Q  129 ctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccg 197  Q
    ||||||| |||||| |||| || |||||||| |||||||||||||| |||| |||||||| ||||||||    
T  31311971 ctgtctctcgagag-tcacatggttgagagtttctctcttcaacctcgagagactcggtttgagacccg 31312038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 39760296 - 39760249
Alignment:
Q  127 gtctgtctcccgagaggtcactt-gattgagagtatctctcttcaacct 174  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  39760296 gtctgtctcccgagaggtcacttgggttgagagt-tctctcttcaacct 39760249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 7471454 - 7471509
Alignment:
Q  129 ctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactc 184  Q
    ||||||||| |||||||||||| |||||||| ||| |||||||||| |||||||||    
T  7471454 ctgtctcccaagaggtcacttggttgagagtttctttcttcaacctcgagaaactc 7471509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 21144682 - 21144755
Alignment:
Q  129 ctgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccggcacc 202  Q
    |||||||||||||  ||||||  |||||||| |||||||||||||   ||||||||||||||| ||||| ||||    
T  21144682 ctgtctcccgagaaatcactttgttgagagtttctctcttcaaccgacagaaactcggttcgatacccgacacc 21144755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 27633740 - 27633669
Alignment:
Q  130 tgtctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccggcacca 203  Q
    ||||||| || |||| |||| ||||||||| |||||||||||||| | ||||||||||||||| ||||||||||    
T  27633740 tgtctcctgataggttacttaattgagagt-tctctcttcaacctcg-gaaactcggttcgagtcccggcacca 27633669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 15925940 - 15925888
Alignment:
Q  143 gtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacc 195  Q
    |||| ||| ||||||| | ||||||||||||| ||||||||||||||||||||    
T  15925940 gtcatttggttgagagaaactctcttcaacctcgagaaactcggttcgagacc 15925888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 445
Target Start/End: Complemental strand, 26613641 - 26613474
Alignment:
Q  278 agacatacaaatccatagcctttggatcttccagtggctttgtcagtgataacaacagcttccaagatctcaccaaattgctcaaaatacttcttcatag 377  Q
    |||||||||||||| || ||||| ||| |||| |||   || ||||||||||  |||||||| |  || ||||||||||| ||||||||  |  ||||      
T  26613641 agacatacaaatccgtatcctttagattttcctgtgttcttatcagtgataatgacagcttcaagtatgtcaccaaattgttcaaaatatgttctcattt 26613542  T
Q  378 tctctttttgagtttcccaagccaatcctccaacaaaaactttggtgtaagttgtgtcaccaaattgt 445  Q
      ||  || ||||||||||||| | ||||||||||||||| || ||| | |||||||| |||||||||    
T  26613541 catcagttggagtttcccaagctagtcctccaacaaaaaccttagtgaatgttgtgtctccaaattgt 26613474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 22719342 - 22719412
Alignment:
Q  132 tctcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacccggcacc 202  Q
    |||||||||| |||||||| |||||||| ||||| ||||||||  ||||| | |||||||||||| |||||    
T  22719342 tctcccgagaagtcacttggttgagagtttctcttttcaacctgaagaaagttggttcgagacccagcacc 22719412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 22712270 - 22712209
Alignment:
Q  134 tcccgagaggtcacttgattgagagtatctctcttcaaccttgagaaactcggttcgagacc 195  Q
    |||||||| |||| ||| || ||||||||||||||||| || |||||||| |||||||||||    
T  22712270 tcccgagaagtcatttggttcagagtatctctcttcaaactcgagaaacttggttcgagacc 22712209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University