View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5113_high_3 (Length: 286)
Name: NF5113_high_3
Description: NF5113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5113_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 36702409 - 36702666
Alignment:
| Q |
10 |
aagaaaatcatcagaaatgtttgttgtggagaatttgcttcagtttccagattctgttcctagcagtatcagagcaaagagaggctttgcaacacatcct |
109 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36702409 |
aagaaaatcatcagaaatgtttgttgtggagaaattgcttcagtttccagattctgttcctagcagtatcagagcaaagagaggctttgcaacacatcct |
36702508 |
T |
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| Q |
110 |
agaagccttgccgaaagggtaagaagaactcggataagtgaacgaatgagaaaattgcaagagattgttccaaacattgataaggtcagaatcatcatca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36702509 |
agaagccttgccgaaagggtaagaagaactcggataagtgaacgaatgagaaaattgcaagagattgttccaaacattgataaggtcagaatcatcatca |
36702608 |
T |
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| Q |
210 |
cacagtttttgatttttcccccttttgagacaattatgtttttgtgtttagaaagtta |
267 |
Q |
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| T |
36702609 |
cacagttgttgatttttcccccttttgagacaattatgtttttgtgtttagaaagtta |
36702666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 18241258 - 18241042
Alignment:
| Q |
10 |
aagaaaatcatcagaaatgtttgttgtggagaatttgcttcagtttccagattctgttcctagcagtatcagagcaaagagaggctttgcaacacatcct |
109 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||||||||||||||||||| ||||||| |
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| T |
18241258 |
aagaaaatcatcagaaatgtttgttgtggagaatcttcttcagtttccagattctgttacaagcagtattagagcaaagagaggctttgcaagacatcct |
18241159 |
T |
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| Q |
110 |
agaagccttgccgaaagggtaagaagaactcggataagtgaacgaatgagaaaattgcaagagattgttccaaacattgataaggtcagaatcatcatca |
209 |
Q |
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| T |
18241158 |
agaagccttgccaagagggtgagaagaactcggataaatgaacgaatgagaaaattgcaagaggtcgttttaaacattgataaggtcagaatcatcatca |
18241059 |
T |
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| Q |
210 |
cacagtttttgattttt |
226 |
Q |
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|||| || ||||||||| |
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| T |
18241058 |
cacaattgttgattttt |
18241042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 21324190 - 21324256
Alignment:
| Q |
129 |
taagaagaactcggataagtgaacgaatgagaaaattgcaagagattgttccaaacattgataaggt |
195 |
Q |
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||||||||||| ||| |||||| ||||||| |||||||||||| ||||||||||||| |||||||| |
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| T |
21324190 |
taagaagaactaagatcagtgaaagaatgaggaaattgcaagagcttgttccaaacatggataaggt |
21324256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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