View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5113_high_5 (Length: 243)

Name: NF5113_high_5
Description: NF5113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5113_high_5
NF5113_high_5
[»] chr4 (22 HSPs)
chr4 (32-235)||(24038068-24038271)
chr4 (36-240)||(31431037-31431241)
chr4 (32-240)||(39382959-39383167)
chr4 (34-240)||(24246538-24246744)
chr4 (37-240)||(18140375-18140578)
chr4 (37-240)||(49127588-49127791)
chr4 (49-235)||(51834225-51834412)
chr4 (114-212)||(53404111-53404209)
chr4 (114-212)||(45105807-45105904)
chr4 (114-212)||(52058252-52058350)
chr4 (119-212)||(30418397-30418490)
chr4 (114-210)||(22606362-22606458)
chr4 (112-182)||(28911579-28911649)
chr4 (114-212)||(38767791-38767889)
chr4 (115-212)||(53663635-53663732)
chr4 (114-210)||(28963870-28963966)
chr4 (147-209)||(16203097-16203159)
chr4 (147-209)||(39732843-39732905)
chr4 (147-209)||(50523874-50523936)
chr4 (114-186)||(49723784-49723855)
chr4 (147-209)||(5937846-5937908)
chr4 (121-186)||(26457118-26457183)
[»] chr3 (21 HSPs)
chr3 (33-240)||(51129016-51129223)
chr3 (36-240)||(47141403-47141607)
chr3 (36-240)||(47696999-47697203)
chr3 (36-234)||(1527531-1527729)
chr3 (36-240)||(52691927-52692131)
chr3 (35-240)||(38469067-38469272)
chr3 (114-212)||(33025798-33025896)
chr3 (114-212)||(42074392-42074490)
chr3 (114-213)||(53687376-53687475)
chr3 (114-212)||(51229727-51229825)
chr3 (114-183)||(51407464-51407533)
chr3 (116-212)||(48181071-48181167)
chr3 (132-210)||(11263709-11263787)
chr3 (114-212)||(42274518-42274616)
chr3 (114-212)||(45150598-45150696)
chr3 (114-210)||(48254506-48254602)
chr3 (114-212)||(28182370-28182468)
chr3 (147-209)||(30809842-30809904)
chr3 (114-212)||(31813401-31813499)
chr3 (147-209)||(44610827-44610889)
chr3 (147-209)||(44328692-44328754)
[»] chr2 (18 HSPs)
chr2 (33-240)||(44282491-44282698)
chr2 (36-240)||(31786699-31786903)
chr2 (36-240)||(40254344-40254548)
chr2 (36-240)||(14379660-14379864)
chr2 (45-240)||(31686789-31686984)
chr2 (40-240)||(2443667-2443868)
chr2 (114-212)||(37640761-37640859)
chr2 (114-212)||(37996718-37996816)
chr2 (117-212)||(3739048-3739143)
chr2 (114-212)||(7473518-7473616)
chr2 (114-212)||(17480814-17480912)
chr2 (148-209)||(37551592-37551653)
chr2 (114-212)||(14033372-14033470)
chr2 (114-212)||(43342277-43342375)
chr2 (114-212)||(13892752-13892850)
chr2 (114-212)||(14032877-14032975)
chr2 (114-212)||(35458185-35458283)
chr2 (151-209)||(44002684-44002742)
[»] chr1 (21 HSPs)
chr1 (34-240)||(26821380-26821586)
chr1 (33-235)||(50979242-50979444)
chr1 (31-240)||(36496053-36496262)
chr1 (36-240)||(38843151-38843355)
chr1 (36-235)||(15353228-15353427)
chr1 (33-240)||(38627535-38627742)
chr1 (35-240)||(7593205-7593410)
chr1 (36-240)||(51488497-51488701)
chr1 (37-240)||(5271505-5271708)
chr1 (36-240)||(27000268-27000472)
chr1 (40-222)||(27575898-27576081)
chr1 (113-212)||(47655888-47655987)
chr1 (112-182)||(11051192-11051262)
chr1 (147-209)||(1762251-1762313)
chr1 (114-212)||(6706132-6706230)
chr1 (114-212)||(13509940-13510038)
chr1 (112-209)||(11829075-11829172)
chr1 (114-212)||(46406421-46406519)
chr1 (1-37)||(31738482-31738518)
chr1 (114-212)||(35604814-35604912)
chr1 (112-177)||(46033716-46033781)
[»] chr8 (15 HSPs)
chr8 (36-240)||(30984303-30984507)
chr8 (36-235)||(30210394-30210593)
chr8 (36-240)||(34774349-34774553)
chr8 (80-190)||(629476-629586)
chr8 (177-240)||(189774-189837)
chr8 (177-240)||(717378-717441)
chr8 (177-240)||(878485-878548)
chr8 (114-212)||(35164381-35164474)
chr8 (114-212)||(35802344-35802442)
chr8 (112-182)||(924099-924169)
chr8 (36-79)||(308872-308915)
chr8 (114-212)||(45276403-45276501)
chr8 (114-212)||(8416662-8416760)
chr8 (114-186)||(36821653-36821725)
chr8 (147-209)||(3590107-3590169)
[»] chr7 (13 HSPs)
chr7 (36-240)||(31012404-31012608)
chr7 (36-234)||(25341452-25341650)
chr7 (91-222)||(41064585-41064717)
chr7 (114-212)||(25970433-25970531)
chr7 (112-209)||(39857075-39857172)
chr7 (113-212)||(37371078-37371177)
chr7 (114-212)||(14999868-14999966)
chr7 (114-212)||(30825190-30825288)
chr7 (116-212)||(26826384-26826480)
chr7 (114-212)||(25472765-25472863)
chr7 (114-212)||(12909229-12909327)
chr7 (114-212)||(43664814-43664912)
chr7 (147-209)||(19544572-19544634)
[»] chr6 (8 HSPs)
chr6 (32-235)||(30018769-30018972)
chr6 (40-222)||(31746179-31746359)
chr6 (112-209)||(4146810-4146907)
chr6 (114-212)||(21517357-21517455)
chr6 (147-186)||(30134180-30134219)
chr6 (114-212)||(365591-365689)
chr6 (147-209)||(20838498-20838560)
chr6 (147-209)||(27825057-27825119)
[»] chr5 (19 HSPs)
chr5 (37-240)||(29542443-29542646)
chr5 (33-240)||(42663353-42663560)
chr5 (36-240)||(3260840-3261044)
chr5 (34-240)||(33114954-33115160)
chr5 (32-240)||(14082809-14083017)
chr5 (112-209)||(2526282-2526379)
chr5 (114-186)||(53693-53765)
chr5 (114-212)||(27739351-27739449)
chr5 (116-213)||(8958502-8958599)
chr5 (114-211)||(37066560-37066657)
chr5 (114-211)||(41040137-41040234)
chr5 (114-212)||(7073275-7073373)
chr5 (114-212)||(21022632-21022730)
chr5 (114-212)||(33229204-33229302)
chr5 (114-212)||(39236896-39236994)
chr5 (147-186)||(40979452-40979491)
chr5 (147-209)||(10900165-10900227)
chr5 (114-212)||(19356501-19356599)
chr5 (147-209)||(19375409-19375471)
[»] scaffold0069 (1 HSPs)
scaffold0069 (114-182)||(16815-16883)
[»] scaffold0006 (1 HSPs)
scaffold0006 (115-212)||(91535-91634)
[»] scaffold0808 (1 HSPs)
scaffold0808 (114-212)||(4090-4188)
[»] scaffold0068 (1 HSPs)
scaffold0068 (114-210)||(37697-37791)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 32 - 235
Target Start/End: Complemental strand, 24038271 - 24038068
Alignment:
Q  32 attaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038271 attaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttc 24038172  T
Q  132 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038171 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattc 24038072  T
Q  232 catc 235  Q
    ||||    
T  24038071 catc 24038068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 31431241 - 31431037
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31431241 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 31431142  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31431141 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 31431042  T
Q  236 tctgc 240  Q
     ||||    
T  31431041 cctgc 31431037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 32 - 240
Target Start/End: Complemental strand, 39383167 - 39382959
Alignment:
Q  32 attaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39383167 attaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttc 39383068  T
Q  132 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39383067 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattc 39382968  T
Q  232 catctctgc 240  Q
    |||| ||||    
T  39382967 catccctgc 39382959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 34 - 240
Target Start/End: Original strand, 24246538 - 24246744
Alignment:
Q  34 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24246538 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattatgcaatatttaacatgtttggtttggcttttcaa 24246637  T
Q  134 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24246638 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 24246737  T
Q  234 tctctgc 240  Q
    || ||||    
T  24246738 tccctgc 24246744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 18140375 - 18140578
Alignment:
Q  37 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18140375 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaat 18140474  T
Q  137 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 236  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18140475 agcttttatcctccaaaagcaattttagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 18140574  T
Q  237 ctgc 240  Q
    ||||    
T  18140575 ctgc 18140578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 49127588 - 49127791
Alignment:
Q  37 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49127588 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaat 49127687  T
Q  137 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 236  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  49127688 agcttttatcctccaaaagcaattttagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 49127787  T
Q  237 ctgc 240  Q
    ||||    
T  49127788 ctgc 49127791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 235
Target Start/End: Complemental strand, 51834412 - 51834225
Alignment:
Q  49 tttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatt-taacatgtttggtttggcttttcaaaatagcttttatcc 147  Q
    |||| |||||| | ||| |||| |||||||  | |||| ||||||||||||| ||| ||| ||| |||||||||||| ||||||| ||| |||| |||||    
T  51834412 tttgacttttgtacagctagaagcaattctataacattccaaaagcaattctacaacattctaatatgtttggtttgacttttcagaattgcttctatcc 51834313  T
Q  148 tccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    |||||||||||||||   | ||||||||||||||| |||||  |||| |||||||||||| ||||| |||||||| || |||||||||    
T  51834312 tccaaaagcaattctccataaagctacaattcctaacttctggcttttctagaatcaattatacactctcaattccatcaattccatc 51834225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 53404209 - 53404111
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||| |  ||||||| ||||||||||||||||||||  || ||||||||||||||||||| |   |||||||||||||||| ||||    
T  53404209 tgtttggtttggcttttaagcatagcttctatcctccaaaagcaattctccttaaagctacaattcctagcttttggttttcctagaatcaattttaca 53404111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 45105807 - 45105904
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||||| ||| |||| ||||||||| ||||||||||  || |||||| ||||| |||||| || |||| |||||||||||||||||    
T  45105807 tgtttggtttggcttttcagaattgcttatatcctccagaagcaattcttcttaaagctaaaattcatagctt-ttgcttttctagaatcaattctaca 45105904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 52058350 - 52058252
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  |||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  52058350 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 52058252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 30418490 - 30418397
Alignment:
Q  119 ggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||||||||| ||||| | || |||||||||||||||||| |  || ||||||||| ||||| ||| |  ||||||||||||||||||||||    
T  30418490 ggtttggcttttaaaaattgattctatcctccaaaagcaattatccttcaagctacaaatcctaacttttagctttcctagaatcaattctaca 30418397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 22606458 - 22606362
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 210  Q
    ||||||||||  ||||| | ||| |||| |||||||||||||||||| |   ||||||||||| ||||||||| | ||||||| |||||||||||||    
T  22606458 tgtttggtttaacttttaagaattgcttctatcctccaaaagcaattattcgtgaagctacaaatcctagcttttgactttccaagaatcaattcta 22606362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 28911579 - 28911649
Alignment:
Q  112 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 182  Q
    ||||||||||||||||| ||| ||| |||| || ||||||||||||||| | | |||||||||||||||||    
T  28911579 catgtttggtttggcttatcagaattgcttctaccctccaaaagcaattgtggatgaagctacaattccta 28911649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 38767791 - 38767889
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||||  ||||| || |  |||||| |||||||||||||||    
T  38767791 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctacaaagcctagtttttggctttccaagaatcaattctaca 38767889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 212
Target Start/End: Complemental strand, 53663732 - 53663635
Alignment:
Q  115 gtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||| |||||||||| | ||| | || |||||||||||||||||| |  || ||||||||||||||| ||| |  |||||||| |||||||||||||    
T  53663732 gtttgatttggctttttagaattgattctatcctccaaaagcaattatccttaaagctacaattcctaacttttggctttcctataatcaattctaca 53663635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 28963966 - 28963870
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 210  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||| |||||  |||| |||||||||||||||    
T  28963966 tgtttggtttgacttttaagaattgattatatcctccaaaagcaattattcttaaagctacaaatcctaacttctagcttttctagaatcaattcta 28963870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 16203159 - 16203097
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    |||||||||||||| | ||||||||||||||||||||||| | | ||  ||||||||||||||    
T  16203159 ctccaaaagcaattttggttgaagctacaattcctagcttttgagttgactagaatcaattct 16203097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 39732843 - 39732905
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    |||||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  39732843 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 39732905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 50523936 - 50523874
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    |||||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  50523936 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 50523874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 49723784 - 49723855
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 186  Q
    ||||||||||||||||| | ||| | || ||||||||||||| |||||| ||| |||||||||||| ||||||    
T  49723784 tgtttggtttggcttttaagaattgtttctatcctccaaaag-aattctcgttaaagctacaattcttagctt 49723855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 5937908 - 5937846
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    |||||||||||||| | | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  5937908 ctccaaaagcaattatggatgaagctacaattcctagcttttgagttagctagaatcaattct 5937846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 26457118 - 26457183
Alignment:
Q  121 tttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 186  Q
    |||| ||||||| ||| ||||||||||||||||| |||||    |||||||||||||| |||||||    
T  26457118 tttgacttttcagaattgcttttatcctccaaaaacaatttcgattgaagctacaatttctagctt 26457183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 33 - 240
Target Start/End: Complemental strand, 51129223 - 51129016
Alignment:
Q  33 ttaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51129223 ttaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttca 51129124  T
Q  133 aaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51129123 aaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcc 51129024  T
Q  233 atctctgc 240  Q
    ||| ||||    
T  51129023 atccctgc 51129016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 47141607 - 47141403
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47141607 agcctctgtttggtttggcatttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 47141508  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47141507 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcttagaatcaattctacaccctcaattctattaattccatc 47141408  T
Q  236 tctgc 240  Q
     ||||    
T  47141407 cctgc 47141403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 47696999 - 47697203
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47696999 agcctctgtttggtttggcttttgcaaagccagaatcaattctgaagcatttcaaaagcaattctgcaatatttaacatgtttggtttgccttttcaaaa 47697098  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47697099 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 47697198  T
Q  236 tctgc 240  Q
     ||||    
T  47697199 cctgc 47697203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 36 - 234
Target Start/End: Original strand, 1527531 - 1527729
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  1527531 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaac 1527630  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 234  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1527631 tagcttttatcctccgaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 1527729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 52691927 - 52692131
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  52691927 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttaaaaa 52692026  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52692027 tagattttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatc 52692126  T
Q  236 tctgc 240  Q
     ||||    
T  52692127 cctgc 52692131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 35 - 240
Target Start/End: Original strand, 38469067 - 38469272
Alignment:
Q  35 aagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 134  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  38469067 aagcctctgtttggtttggcttttgcaaagccagaatcaattatggagcatttcaaaagcaattctgcaatatttaacatgtttggtttaccttttcaaa 38469166  T
Q  135 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 234  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38469167 atagtttttatcctccaaaagcaattctagttgaagctacaattcttagcttcttactttcctataatcaattctacaccctcaattctattaattccat 38469266  T
Q  235 ctctgc 240  Q
    | ||||    
T  38469267 ccctgc 38469272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 33025896 - 33025798
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||||||  || ||||||||||||||||||| |  |||||||| |||||||||||||    
T  33025896 tgtttggtttgacttttcaaaattgcttctatcctccaaaagcaattctccttaaagctacaattcctagcttttggctttcctataatcaattctaca 33025798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 42074392 - 42074490
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||||| ||| |||| |||||||||||| |||||||  || ||||||||||||||||||| | ||||| || ||||||||||||||    
T  42074392 tgtttggtttggcttttcagaattgcttctatcctccaaaaacaattctccttaaagctacaattcctagcttttgactttgctcgaatcaattctaca 42074490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 53687475 - 53687376
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacac 213  Q
    ||||||||||| ||||||| ||| |||| |||||||||||||||||||| ||| |||||||||||||||| || |  |||| ||| ||||||||||||||    
T  53687475 tgtttggtttgacttttcataattgcttctatcctccaaaagcaattcttgttaaagctacaattcctaggttttggcttttctaaaatcaattctacac 53687376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 51229727 - 51229825
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||||||| |||||||||||| |||| ||||||||||||  ||||||  || ||||||||||||||| ||| |  ||||||||||||||||||||||    
T  51229727 tgtttggtttagcttttcaaaattgcttctatcctccaaaaataattctccttaaagctacaattcctaacttttggctttcctagaatcaattctaca 51229825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 51407464 - 51407533
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctag 183  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||||| | ||||||||||||||| ||||    
T  51407464 tgtttggtttggcttttcagaattgcttctatcctccaaaagcaattttggttgaagctacaatttctag 51407533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 48181071 - 48181167
Alignment:
Q  116 tttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||| | ||| | ||| |||| ||||||||||||||||||||  || || |||||||||||||||| |  ||||||||||||||||||||||    
T  48181071 tttggtttgacattttagaattgcttctatcctccaaaagcaattctccttaaaactacaattcctagcttttggctttcctagaatcaattctaca 48181167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 11263709 - 11263787
Alignment:
Q  132 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 210  Q
    ||||| |||| |||||||||||||||||| |  |||||||||||| ||||||||| |  ||||||||||||||||||||    
T  11263709 aaaattgcttctatcctccaaaagcaattatccttgaagctacaaatcctagcttttggctttcctagaatcaattcta 11263787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 42274518 - 42274616
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||| |||||||||| | ||| | || ||||||||||||||||||||  || ||| ||||||||||||||| |  ||||| ||||||||||||||||    
T  42274518 tgtttgatttggctttttagaattgattctatcctccaaaagcaattctccttaaagttacaattcctagcttttggctttcatagaatcaattctaca 42274616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 45150598 - 45150696
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||| | ||| | || |||||||||||| ||||| |  |||||||||||| ||||||||| |   |||||||||||||||||||||    
T  45150598 tgtttggtttggcttttaagaattgtttctatcctccaaaaacaattatccttgaagctacaaatcctagcttttggttttcctagaatcaattctaca 45150696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 48254602 - 48254506
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 210  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||    
T  48254602 tgtttggtttgacttttaagaattgattatatcctccaaaagcaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattcta 48254506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 28182370 - 28182468
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||| | ||| |||| |||||||||| ||||||| |  || |||||| |||||||| ||| |  |||||||| |||||||||||||    
T  28182370 tgtttggtttggctttttagaattgcttctatcctccaacagcaattatccttaaagctaaaattcctaacttttggctttcctataatcaattctaca 28182468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 30809842 - 30809904
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    |||||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  30809842 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 30809904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 31813401 - 31813499
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||| ||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  31813401 tgtttagtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 31813499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 44610889 - 44610827
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    |||||||||||||||| ||||||||||||||| ||||||| | | |||  |||||||||||||    
T  44610889 ctccaaaagcaattctggttgaagctacaatttctagcttttgagtttattagaatcaattct 44610827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 44328692 - 44328754
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    |||||||||||||| | | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  44328692 ctccaaaagcaattttggctgaagctacaattcctagcttttgagttaactagaatcaattct 44328754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 44282491 - 44282698
Alignment:
Q  33 ttaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44282491 ttaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttca 44282590  T
Q  133 aaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44282591 aaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcc 44282690  T
Q  233 atctctgc 240  Q
    ||| ||||    
T  44282691 atccctgc 44282698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 31786699 - 31786903
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786699 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 31786798  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786799 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 31786898  T
Q  236 tctgc 240  Q
     ||||    
T  31786899 cctgc 31786903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 40254344 - 40254548
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254344 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 40254443  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254444 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 40254543  T
Q  236 tctgc 240  Q
     ||||    
T  40254544 cctgc 40254548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 14379660 - 14379864
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14379660 agcctccgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 14379759  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14379760 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 14379859  T
Q  236 tctgc 240  Q
     ||||    
T  14379860 cctgc 14379864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 45 - 240
Target Start/End: Complemental strand, 31686984 - 31686789
Alignment:
Q  45 ttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagctttta 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31686984 ttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagctttta 31686885  T
Q  145 tcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatctctgc 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31686884 tcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgc 31686789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 2443868 - 2443667
Alignment:
Q  40 tctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggcttttcaaaatag 138  Q
    |||||||||||||||||||| | |||  ||| |||||||  | |||| ||||||||||||| ||| |||| || |||||||||||||||||||| ||| |    
T  2443868 tctgtttggtttggcttttgtacagctggaaacaattctacaacattccaaaagcaattctacaacatttcaatatgtttggtttggcttttcagaattg 2443769  T
Q  139 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatctct 238  Q
    ||| |||||||||||| |||||||   | ||||||||||||||||||| |  |||| ||||||||||||||||||||||||||| || ||||||||| ||    
T  2443768 cttctatcctccaaaaacaattctccataaagctacaattcctagcttatgccttttctagaatcaattctacaccctcaattccatcaattccatcact 2443669  T
Q  239 gc 240  Q
    ||    
T  2443668 gc 2443667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 37640859 - 37640761
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||  | ||| |||| |||||||||||||||||| |  |||||||||||| || |||||| |  ||||||||||||||||||||||    
T  37640859 tgtttggtttggctttcaagaattgcttctatcctccaaaagcaattatccttgaagctacaaatcttagcttttggctttcctagaatcaattctaca 37640761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 37996718 - 37996816
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||||| ||| |||| ||||||||||||| |||||   || ||||||||||||||| ||| |  ||||||| ||||||||||||||    
T  37996718 tgtttggtttggcttttcataattgcttctatcctccaaaagtaattcaccttaaagctacaattcctaacttttggctttccttgaatcaattctaca 37996816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 3739143 - 3739048
Alignment:
Q  117 ttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||||||||||||| ||| |||| |||| ||||||||||||| |  || |||||||||||||||  || | |||||| ||||||||||||||||    
T  3739143 ttggtttggcttttcataattgcttctatcatccaaaagcaattttccttaaagctacaattcctaatttttgactttcttagaatcaattctaca 3739048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 7473518 - 7473616
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||||||||| |||| | ||| |||| |||||||||||| ||||| |  |||||||||||| ||||| ||| |  |||||| |||||||||||||||    
T  7473518 tgtttggtttggtttttaagaattgcttctatcctccaaaaacaattatccttgaagctacaaatcctaacttttggctttccaagaatcaattctaca 7473616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 17480814 - 17480912
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||| ||||||||||| | ||| | || |||||| ||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  17480814 tgtttagtttggcttttaagaattgattctatccttcaaaagcaattatctttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 17480912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 37551592 - 37551653
Alignment:
Q  148 tccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    ||||||||||||||| |||||||||||||||||||| |||| | ||  ||||||||||||||    
T  37551592 tccaaaagcaattctggttgaagctacaattcctagtttctgagttaactagaatcaattct 37551653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 14033372 - 14033470
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  14033372 tgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 14033470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 43342375 - 43342277
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||| ||||| |||| | ||| | || |||||||||||||||||| |  || ||||||||| | |||||||||  |||| |||||||||||||||||    
T  43342375 tgtttgatttggtttttaagaattgattctatcctccaaaagcaattatccttaaagctacaaattctagcttctagcttttctagaatcaattctaca 43342277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 13892752 - 13892850
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||| |||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  13892752 tgtttgatttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 13892850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 14032877 - 14032975
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||| |||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  14032877 tgtttgatttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 14032975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 35458283 - 35458185
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||| ||||| | ||| | || |||| ||||||||||||| |  || || |||||| ||||| |||||  |||| |||||||||||||||||    
T  35458283 tgtttggtttgacttttaagaattgattctatcatccaaaagcaattatccttaaaactacaaatcctaacttctagcttttctagaatcaattctaca 35458185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 44002684 - 44002742
Alignment:
Q  151 aaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    |||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  44002684 aaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 44002742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 34 - 240
Target Start/End: Original strand, 26821380 - 26821586
Alignment:
Q  34 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26821380 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 26821479  T
Q  134 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26821480 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 26821579  T
Q  234 tctctgc 240  Q
    || ||||    
T  26821580 tccctgc 26821586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 33 - 235
Target Start/End: Complemental strand, 50979444 - 50979242
Alignment:
Q  33 ttaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50979444 ttaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttca 50979345  T
Q  133 aaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50979344 aaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcc 50979245  T
Q  233 atc 235  Q
    |||    
T  50979244 atc 50979242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 31 - 240
Target Start/End: Complemental strand, 36496262 - 36496053
Alignment:
Q  31 cattaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttt 130  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36496262 cattacgcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttt 36496163  T
Q  131 caaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36496162 caaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatt 36496063  T
Q  231 ccatctctgc 240  Q
    ||||| ||||    
T  36496062 ccatccctgc 36496053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 38843151 - 38843355
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843151 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 38843250  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843251 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 38843350  T
Q  236 tctgc 240  Q
     ||||    
T  38843351 cctgc 38843355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 15353228 - 15353427
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15353228 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 15353327  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15353328 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 15353427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 38627535 - 38627742
Alignment:
Q  33 ttaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38627535 ttaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttca 38627634  T
Q  133 aaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcc 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38627635 aaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttc 38627734  T
Q  233 atctctgc 240  Q
    ||| ||||    
T  38627735 atccctgc 38627742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 35 - 240
Target Start/End: Complemental strand, 7593410 - 7593205
Alignment:
Q  35 aagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7593410 aagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 7593311  T
Q  135 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7593310 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctccaccctcaattctattaattccat 7593211  T
Q  235 ctctgc 240  Q
    | ||||    
T  7593210 ccctgc 7593205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 51488701 - 51488497
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51488701 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaaa 51488602  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51488601 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 51488502  T
Q  236 tctgc 240  Q
     ||||    
T  51488501 cctgc 51488497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 5271708 - 5271505
Alignment:
Q  37 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5271708 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 5271609  T
Q  137 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5271608 agcttttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 5271509  T
Q  237 ctgc 240  Q
    ||||    
T  5271508 ctgc 5271505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 27000472 - 27000268
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27000472 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatatttggtttggcttttcaaaa 27000373  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27000372 tagtttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 27000273  T
Q  236 tctgc 240  Q
     ||||    
T  27000272 cctgc 27000268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 27575898 - 27576081
Alignment:
Q  40 tctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggcttttcaaaatag 138  Q
    |||||||||||||||||||| | ||| |||| |||||||  | |||| ||||||||||||| ||| |||| || |||||||||||| ||||||| ||| |    
T  27575898 tctgtttggtttggcttttgtacagctagaagcaattctacaacattccaaaagcaattctacaacatttcaatatgtttggtttgacttttcataattg 27575997  T
Q  139 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 222  Q
    ||| ||||||||||||||||||||   | ||| |||||||  |||||||| ||||| |||||||||||||||||||||||||||    
T  27575998 cttctatcctccaaaagcaattctccataaagttacaatttttagcttctgacttttctagaatcaattctacaccctcaattc 27576081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 47655987 - 47655888
Alignment:
Q  113 atgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||||||||||||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||||||||| ||||| |||||||||||||||||    
T  47655987 atgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccttaaagctacaaatcctagcttctaacttttctagaatcaattctaca 47655888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 11051262 - 11051192
Alignment:
Q  112 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 182  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| ||||| | |||||| ||||||||||||    
T  11051262 catgtttggtttgacttttcaaaattgcttctatcctccaaaaacaattatggttgaatctacaattccta 11051192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 1762251 - 1762313
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    |||||||||||||||| ||||||||||||||||||| ||| | | ||| ||||||||||||||    
T  1762251 ctccaaaagcaattctggttgaagctacaattcctaacttttaagtttactagaatcaattct 1762313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 6706132 - 6706230
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||| ||||||||||| | ||| | || |||||||||||| ||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  6706132 tgtttagtttggcttttaagaattgattctatcctccaaaaacaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 6706230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 13510038 - 13509940
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||||||| |||||| | ||| | || |||||||||||||||||| |  || |||||| || |||||||||||  |||| |||||||||||||||||    
T  13510038 tgtttggtttagcttttaagaattgattctatcctccaaaagcaattatccttaaagctataaatcctagcttctagcttttctagaatcaattctaca 13509940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 11829075 - 11829172
Alignment:
Q  112 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    ||||||||||||| ||||| | ||| |||| |||||||||||||||||||| | ||||| || |||||||| ||| | | ||  ||||||||||||||    
T  11829075 catgtttggtttgccttttaagaattgcttctatcctccaaaagcaattctggatgaaggtataattcctaacttttgagttaactagaatcaattct 11829172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 46406421 - 46406519
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| || |||||| |  ||||  ||||||||||||||||    
T  46406421 tgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcttagcttttggcttttgtagaatcaattctaca 46406519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31738518 - 31738482
Alignment:
Q  1 tatacaggtgaaagctaccaggggcggatacattaag 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  31738518 tatacatgtgaaagctaccaggggcggatacattaag 31738482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 35604814 - 35604912
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||| |||| ||||| | ||| |||| |||||||||||| ||||| |  |||||||||||| |  |||||| | |||||  ||||||||||||||||    
T  35604814 tgtttgatttgacttttaagaattgcttctatcctccaaaaacaattatccttgaagctacaaatattagcttttgacttttgtagaatcaattctaca 35604912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 46033781 - 46033716
Alignment:
Q  112 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaat 177  Q
    |||||||| |||| ||||||||||| |||| |||||| ||||| |||||||  |||||| ||||||    
T  46033781 catgtttgatttgacttttcaaaattgcttctatccttcaaaaacaattctcattgaagttacaat 46033716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 30984507 - 30984303
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30984507 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 30984408  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30984407 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 30984308  T
Q  236 tctgc 240  Q
     ||||    
T  30984307 cctgc 30984303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 30210394 - 30210593
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210394 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 30210493  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210494 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 30210593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 34774553 - 34774349
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34774553 agcctctgtttggtttggcttttgcaaagccagaatcaattttggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 34774454  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34774453 tagtttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 34774354  T
Q  236 tctgc 240  Q
     ||||    
T  34774353 cctgc 34774349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 80 - 190
Target Start/End: Complemental strand, 629586 - 629476
Alignment:
Q  80 gagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattc 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  629586 gagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattc 629487  T
Q  180 ctagcttctta 190  Q
    |||||||||||    
T  629486 ctagcttctta 629476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 189774 - 189837
Alignment:
Q  177 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatctctgc 240  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  189774 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgc 189837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 717378 - 717441
Alignment:
Q  177 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatctctgc 240  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  717378 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgc 717441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 878485 - 878548
Alignment:
Q  177 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatctctgc 240  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  878485 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgc 878548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 35164474 - 35164381
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  35164474 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 35164381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 35802442 - 35802344
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||| ||||| ||||| |||| |||||||||||||||||| |  |||||||||||  ||||||||| |  ||||||||||||||||||||||    
T  35802442 tgtttggtttgacttttaaaaattgcttctatcctccaaaagcaattatccttgaagctacatatcctagcttttggctttcctagaatcaattctaca 35802344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 924099 - 924169
Alignment:
Q  112 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 182  Q
    ||||||||||||| ||||||||||| |||| ||| ||||||||| |||||||||| |||||||||||||||    
T  924099 catgtttggtttgacttttcaaaattgcttctatactccaaaagtaattctagttaaagctacaattccta 924169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 308872 - 308915
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctg 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  308872 agcctctgtttggtttggcttttgcaaagccagaatcaattctg 308915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 45276501 - 45276403
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||| ||||| ||||| ||||| | || |||||||||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  45276501 tgttttgtttgacttttaaaaattgattatatcctccaaaagcaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 45276403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 8416662 - 8416760
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||| |||||||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||| |||||  |||| |||||||||||||||||    
T  8416662 tgtttgatttggcttttaagaattgattctatcctccaaaagcaattatccttaaagctacaaatcctaacttctagcttttctagaatcaattctaca 8416760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 36821725 - 36821653
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 186  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||||| |  || ||| ||||||||| |||||    
T  36821725 tgtttggtttggcttttcagaattgcttctatcctccaaaagcaattatccttaaagttacaattccaagctt 36821653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 3590107 - 3590169
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    |||||||| ||||||| ||||||||||||||||||| ||| | | ||  ||||||||||||||    
T  3590107 ctccaaaaacaattctggttgaagctacaattcctaacttttgagttaactagaatcaattct 3590169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 31012608 - 31012404
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31012608 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 31012509  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31012508 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 31012409  T
Q  236 tctgc 240  Q
     ||||    
T  31012408 cctgc 31012404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 36 - 234
Target Start/End: Complemental strand, 25341650 - 25341452
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25341650 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 25341551  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25341550 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 25341452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 41064585 - 41064717
Alignment:
Q  91 aagcaattctgcaatatt-taacatgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttctt 189  Q
    |||||||||| ||| ||| ||| |||||||||||| ||||||| ||| |||| |||||||||||| |||||||   | |||||||||||||||||||||     
T  41064585 aagcaattctacaacattctaatatgtttggtttgccttttcataattgcttctatcctccaaaaacaattctccataaagctacaattcctagcttctg 41064684  T
Q  190 actttcctagaatcaattctacaccctcaattc 222  Q
    ||||| |||||||||||||||||||||||||||    
T  41064685 acttttctagaatcaattctacaccctcaattc 41064717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 25970433 - 25970531
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||| | ||| |||| ||||||||||||| ||||||  || ||||||||||||||||||| |  ||||| ||||||||||||||||    
T  25970433 tgtttggtttggcttttaagaattgcttctatcctccaaaagtaattctctttaaagctacaattcctagcttttggctttcttagaatcaattctaca 25970531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 39857075 - 39857172
Alignment:
Q  112 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    ||||||||||||| ||||||| ||| |||| ||||||||||||| |||||| | |||||||||||||| |||||| | | ||  ||||||||||||||    
T  39857075 catgtttggtttgacttttcagaattgcttctatcctccaaaagtaattctggatgaagctacaattcatagcttttgagttaactagaatcaattct 39857172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 37371078 - 37371177
Alignment:
Q  113 atgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||||||||||||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||| |||||  |||| |||||||||||||||||    
T  37371078 atgtttggtttggcttttaagaattggttctatcctccaaaagcaattatctttaaagctacaaatcctaacttctagcttttctagaatcaattctaca 37371177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 14999868 - 14999966
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||| | ||| | || ||||||||||||| ||||||  || |||||||||||||||  || |  ||||||||||||||||||||||    
T  14999868 tgtttggtttggctttttagaattgattctatcctccaaaagtaattctccttaaagctacaattcctaatttttggctttcctagaatcaattctaca 14999966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 30825190 - 30825288
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||| ||||| | ||| |||| |||||||||||| |||||||  || ||| ||||||||||||||| |  |||||| |||||||||||||||    
T  30825190 tgtttggtttgcctttttagaattgcttctatcctccaaaaacaattctccttaaagttacaattcctagcttttggctttccaagaatcaattctaca 30825288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 26826384 - 26826480
Alignment:
Q  116 tttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||| | |||  ||| ||||||||||||| ||||||  || ||| ||||||||||| ||| || |||||||| |||||||||||||    
T  26826384 tttggtttggcttttaagaattacttctatcctccaaaagtaattctccttaaaggtacaattcctaactttttcctttcctataatcaattctaca 26826480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 25472863 - 25472765
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |  |||||||||||| || ||||||||   ||| |||||||||||||||||    
T  25472863 tgtttggtttgacttttaagaattgattctatcctccaaaagcaattatccttgaagctacaaatcatagcttctacattttctagaatcaattctaca 25472765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 12909229 - 12909327
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  12909229 tgtttggtttgacttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 12909327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 43664912 - 43664814
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||| ||| |||||||| |||   || |||||||||||||||||| |  || ||||||||||| ||| | | | |||||||||||||||||||||||    
T  43664912 tgtttgttttagcttttcagaattcattctatcctccaaaagcaatttttcttaaagctacaatttctaacctttgactttcctagaatcaattctaca 43664814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 19544572 - 19544634
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    ||||||||| |||| | |||||||||||||||| |||||| | | ||| ||||||||||||||    
T  19544572 ctccaaaagtaattatggttgaagctacaattcatagcttttgagtttactagaatcaattct 19544634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 32 - 235
Target Start/End: Original strand, 30018769 - 30018972
Alignment:
Q  32 attaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30018769 attaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttc 30018868  T
Q  132 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30018869 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctatcttcttactttcctagaatcaattctacaccctcaattctattaattc 30018968  T
Q  232 catc 235  Q
    ||||    
T  30018969 catc 30018972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 31746359 - 31746179
Alignment:
Q  40 tctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggcttttcaaaatag 138  Q
    |||||||||||||||||||| | |   |||| |||||||  | | |||||||||||||||| ||| |||  || |||||||||||| ||||||||||| |    
T  31746359 tctgtttggtttggcttttgtaca---agaagcaattctacaacttttcaaaagcaattctacaacattccaatatgtttggtttgacttttcaaaattg 31746263  T
Q  139 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 222  Q
    ||| ||||||||||||||||||||   |  |||||||||||||| ||| |  |||| ||||||||||||||||| |||||||||    
T  31746262 cttctatcctccaaaagcaattctccatatagctacaattcctaacttatggcttttctagaatcaattctacatcctcaattc 31746179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 4146810 - 4146907
Alignment:
Q  112 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    ||||||||||||||||||||| ||| |||| || || |||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  4146810 catgtttggtttggcttttcagaattgcttctaccccccaaaagcaattctggatgaagctacaattcctagcttttgagttaactagaatcaattct 4146907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 21517455 - 21517357
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  21517455 tgtttggtttgacttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 21517357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 30134180 - 30134219
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagctt 186  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  30134180 ctccaaaagcaattctggttgaagctacaatttctagctt 30134219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 365591 - 365689
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||| ||||| | ||| | || |||| ||||||||||||| |  || ||||||||| ||||| ||||| ||||| ||||| |||||| ||||    
T  365591 tgtttggtttgacttttaagaattgattctatcatccaaaagcaattatccttaaagctacaaatcctaacttctaacttttctagactcaattttaca 365689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 20838560 - 20838498
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    |||||||||||||||| ||||||||||||| ||||| ||| | | ||| ||| ||||||||||    
T  20838560 ctccaaaagcaattctggttgaagctacaaatcctaacttttgagtttactataatcaattct 20838498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 27825057 - 27825119
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    |||||||||||||| | ||||||||||||||||||| ||| | | ||  ||||||||||||||    
T  27825057 ctccaaaagcaattatggttgaagctacaattcctaacttttcagttaactagaatcaattct 27825119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 29542646 - 29542443
Alignment:
Q  37 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29542646 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 29542547  T
Q  137 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29542546 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 29542447  T
Q  237 ctgc 240  Q
    ||||    
T  29542446 ctgc 29542443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 42663353 - 42663560
Alignment:
Q  33 ttaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttca 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42663353 ttaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttca 42663452  T
Q  133 aaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42663453 aaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcc 42663552  T
Q  233 atctctgc 240  Q
    ||| ||||    
T  42663553 atccctgc 42663560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 3261044 - 3260840
Alignment:
Q  36 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3261044 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaaa 3260945  T
Q  136 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3260944 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 3260845  T
Q  236 tctgc 240  Q
     ||||    
T  3260844 cctgc 3260840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 34 - 240
Target Start/End: Original strand, 33114954 - 33115160
Alignment:
Q  34 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33114954 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaa 33115053  T
Q  134 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 233  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33115054 aatagtttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 33115153  T
Q  234 tctctgc 240  Q
    || ||||    
T  33115154 tccctgc 33115160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 14082809 - 14083017
Alignment:
Q  32 attaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttc 131  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||     
T  14082809 attatgcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctacaatatttaacatgtttggtttgacttttt 14082908  T
Q  132 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14082909 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattc 14083008  T
Q  232 catctctgc 240  Q
    |||| ||||    
T  14083009 catccctgc 14083017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 2526282 - 2526379
Alignment:
Q  112 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    ||||||||||||||||||||| ||| |||| || || |||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  2526282 catgtttggtttggcttttcagaattgcttctaccccccaaaagcaattctggatgaagctacaattcctagcttttgagttaactagaatcaattct 2526379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 53765 - 53693
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 186  Q
    ||||||||||| ||||||| ||| |||| |||||||||||||||||| | |||||||||||||||||||||||    
T  53765 tgtttggtttgccttttcataattgcttctatcctccaaaagcaattatggttgaagctacaattcctagctt 53693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 27739449 - 27739351
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  27739449 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccgtgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 27739351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 8958599 - 8958502
Alignment:
Q  116 tttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacac 213  Q
    ||||||||| ||||||| ||| | || ||||||| |||| |||||||  || |||||||||||||||  || |  |||||||||||||||||||||||    
T  8958599 tttggtttgacttttcagaattgtttctatcctctaaaaacaattctccttaaagctacaattcctaatttttggctttcctagaatcaattctacac 8958502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 37066657 - 37066560
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctac 211  Q
    ||||||||||||||||| | ||| | || ||||||| |||||||||| |  || ||||||||| ||||| |||||  |||| ||||||||||||||||    
T  37066657 tgtttggtttggcttttaagaattggttatatcctctaaaagcaattatcattaaagctacaaatcctaacttctagcttttctagaatcaattctac 37066560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 41040234 - 41040137
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctac 211  Q
    ||||||||||||||||| | ||| |||| ||||||||||||  |||| |  |||||||||||| ||||||||| |  |||| | ||||||||||||||    
T  41040234 tgtttggtttggcttttaagaattgcttctatcctccaaaaataattatccttgaagctacaaatcctagcttttggcttttcaagaatcaattctac 41040137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 7073373 - 7073275
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||| ||||| |||| |||   ||||||| |||| |  |||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  7073373 tgtttggtttggcttttaaaaattgcttctatttcccaaaagtaattatccttgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 7073275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 21022730 - 21022632
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||| | ||| | || |||||||| ||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  21022730 tgtttggtttggcttttaagaattgattctatcctcctaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 21022632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 33229204 - 33229302
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  33229204 tgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 33229302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 39236994 - 39236896
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||| | ||| | || |||||||||||| ||||| |   ||||||||||| ||||| ||| | |||||  ||||||||||||||||    
T  39236994 tgtttggtttggcttttaagaattgattctatcctccaaaaacaattatccatgaagctacaaatcctaacttttgacttttgtagaatcaattctaca 39236896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 40979452 - 40979491
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagctt 186  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  40979452 ctccaaaagcaattctggatgaagctacaattcctagctt 40979491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 10900165 - 10900227
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    |||||||||||||||| | ||||||||||||||||| ||| | | ||  ||||||||||||||    
T  10900165 ctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattct 10900227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 19356501 - 19356599
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||||||||||||||| | | | | || ||||||| |||||||||| |  || || |||||| |||| |||||| | ||| |||||||||||||||||    
T  19356501 tgtttggtttggcttttaagagttgattctatcctctaaaagcaattatccttaaaactacaaatccttgcttctaatttttctagaatcaattctaca 19356599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 19375471 - 19375409
Alignment:
Q  147 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 209  Q
    |||||||||||||||| | ||||||||||||||||| ||| | | ||  ||||||||||||||    
T  19375471 ctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattct 19375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 16815 - 16883
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 182  Q
    ||||||||||||||||| | ||| | || ||||||||||||||||||||| || |||||||||||||||    
T  16815 tgtttggtttggctttttagaattgattctatcctccaaaagcaattctaattaaagctacaattccta 16883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 91535 - 91634
Alignment:
Q  115 gtttggtttggcttttcaaaatagcttttatcctccaaaagca--attctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    |||||||||||||||| | ||| | || |||||||||||||||  |||||| || ||||||||||||||| ||| |  ||||| |||||  |||||||||    
T  91535 gtttggtttggctttttagaattgattctatcctccaaaagcaatattctacttaaagctacaattcctaacttttggctttcatagaacaaattctaca 91634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 4090 - 4188
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 212  Q
    ||||| ||||||||||| | ||| | || ||||||| |||||||||| |  || |||||| || |||||||||||  |||| ||| |||||||||||||    
T  4090 tgtttagtttggcttttaagaattgattctatcctcgaaaagcaattatcattaaagctaaaaatcctagcttctagcttttctaaaatcaattctaca 4188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 37697 - 37791
Alignment:
Q  114 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 210  Q
    ||||||||||||||||| | ||| | || |||||||||||| ||||| |  || ||||||||| |  ||||||||  |||| |||||||||||||||    
T  37697 tgtttggtttggcttttaagaattgattctatcctccaaaaacaattatcctttaagctacaaat--tagcttctagcttttctagaatcaattcta 37791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University