View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5113_low_7 (Length: 243)
Name: NF5113_low_7
Description: NF5113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5113_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 15419139 - 15419365
Alignment:
| Q |
17 |
agctttagggacatcaattgttgtatccggcggtaaaactccgccatttttctccttaactaactgtttttctttcttctcttccctgctgttatacatt |
116 |
Q |
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| T |
15419139 |
agctttagggacatcaattgttgtatccggtggtaaaactccgccatttttctccttaactaactgtttttctttcttctcttccctgctgttatacatt |
15419238 |
T |
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| Q |
117 |
ttacatcttttctttattacctcaggaagtccattgattctcactttaaattcatcatattctctcttcatccatctcctatcttttacaaaatcatgtc |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15419239 |
ttacatcttttctttattacctcaggtagtccattgattctcactttaaattcatcatattctctcttcatccatctcctatcttttacaaaatcatgtc |
15419338 |
T |
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| Q |
217 |
ttttcttgttctttgtaggatctttct |
243 |
Q |
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| T |
15419339 |
ttttcttgttctttgtaggatctttct |
15419365 |
T |
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