View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5114-Insertion-1 (Length: 577)
Name: NF5114-Insertion-1
Description: NF5114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5114-Insertion-1 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 167 - 577
Target Start/End: Original strand, 31740035 - 31740443
Alignment:
| Q |
167 |
atttaattgtaccatcttaatttttgaagttctttgttttctcatatatgttctttcagttctattatgtgtacactgctacaaattttcgcacattttg |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
31740035 |
atttaattgtaccatcttaatttttgaagtttttt--tttctcatatatgttctttcagttctattatgtttacactgctacaaattttcgcactttttg |
31740132 |
T |
|
| Q |
267 |
ttataaaaatacatgtgttcgttatattgtaaatgtggtatctcttgcaatttcaaaaagacttttctctacataatgacataagactatcatggagttg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31740133 |
ttataaaaatacatgtgttcgttatattgtaaatgtggcatctcttgcaatttcaaaaagatttttctccacataatgacataagactatcatggagttg |
31740232 |
T |
|
| Q |
367 |
agcaaactagtatttgcttctgccatataaaatgacatttgtatatgagtggaaggaataaatggtagccatcaaattaaaaggaagtattgagattaaa |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31740233 |
agcaaactagtatttgcttctgccatataaaatgacatttgtatatgagttgaaggaataaatggtagccatcaaattaaaaggaagtgttgagattaaa |
31740332 |
T |
|
| Q |
467 |
acataactccatcgaatcatgtgtctattctctcactcctttccgtctttttcagcctcaacatttcttcctccctcgcgttccattcttattggttatt |
566 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31740333 |
acataactccatcgagtcatgtgtctattctctcactcctttccatctttttcagcctcaacatttcttcttccctcgcgttccattcttattggttatt |
31740432 |
T |
|
| Q |
567 |
gtttcatcgct |
577 |
Q |
| |
|
||||||||||| |
|
|
| T |
31740433 |
gtttcatcgct |
31740443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 31739005 - 31739163
Alignment:
| Q |
7 |
aaggtgagggtcatcccacttataaatatatttttaaattatatttcatttatgtgtgtgattgttaataaacatcttcgtattcgtgataagatattca |
106 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31739005 |
aaggtgagggccatcccacttataaatatatttttaaattatatttcatttatgtgtgtgacggttaataaacatctttgtattcgtgataagatattca |
31739104 |
T |
|
| Q |
107 |
gttcgagtgattcaatattggtgacacgataatatatgattcaatgaatctttgatgca |
165 |
Q |
| |
|
||||||||||| || |||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
31739105 |
tttcgagtgatttaacattggtgacacgataacatatgattcaatgaatcttagatgca |
31739163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University