View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5114-Insertion-5 (Length: 307)

Name: NF5114-Insertion-5
Description: NF5114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5114-Insertion-5
NF5114-Insertion-5
[»] chr8 (16 HSPs)
chr8 (6-163)||(43399869-43400028)
chr8 (167-297)||(41478989-41479118)
chr8 (164-297)||(23115353-23115485)
chr8 (164-291)||(42735468-42735594)
chr8 (167-297)||(43959549-43959679)
chr8 (165-256)||(7507125-7507215)
chr8 (164-297)||(5576806-5576938)
chr8 (164-297)||(2705004-2705136)
chr8 (168-297)||(26374615-26374741)
chr8 (164-297)||(32711467-32711599)
chr8 (175-253)||(26373705-26373782)
chr8 (163-256)||(24214817-24214909)
chr8 (164-292)||(8543408-8543539)
chr8 (213-297)||(42938302-42938386)
chr8 (164-249)||(24502004-24502088)
chr8 (165-241)||(42937250-42937325)
[»] chr7 (20 HSPs)
chr7 (165-297)||(973074-973206)
chr7 (164-297)||(44343581-44343713)
chr7 (164-297)||(30440686-30440818)
chr7 (164-292)||(18914925-18915052)
chr7 (163-256)||(43679358-43679451)
chr7 (164-297)||(12893298-12893430)
chr7 (164-297)||(40996834-40996967)
chr7 (164-297)||(8078285-8078417)
chr7 (165-297)||(43581275-43581406)
chr7 (165-297)||(31638766-31638897)
chr7 (166-256)||(32143145-32143235)
chr7 (167-297)||(727405-727534)
chr7 (164-256)||(34695121-34695212)
chr7 (165-256)||(39219561-39219651)
chr7 (165-297)||(47879059-47879190)
chr7 (165-297)||(47914157-47914288)
chr7 (167-256)||(20275489-20275577)
chr7 (164-297)||(34008905-34009034)
chr7 (219-297)||(34695217-34695295)
chr7 (211-297)||(7719445-7719532)
[»] chr3 (23 HSPs)
chr3 (164-297)||(20498098-20498229)
chr3 (164-297)||(19253715-19253847)
chr3 (164-255)||(996313-996403)
chr3 (165-297)||(37820663-37820794)
chr3 (164-291)||(3206388-3206514)
chr3 (164-297)||(35337622-35337755)
chr3 (164-288)||(10139341-10139464)
chr3 (168-297)||(6589455-6589584)
chr3 (164-247)||(12734076-12734158)
chr3 (164-297)||(22057651-22057781)
chr3 (214-297)||(44762223-44762306)
chr3 (159-241)||(52114413-52114494)
chr3 (164-250)||(40246732-40246817)
chr3 (211-297)||(1440139-1440224)
chr3 (211-255)||(6131440-6131484)
chr3 (164-253)||(29449090-29449178)
chr3 (163-202)||(33996771-33996810)
chr3 (161-200)||(52079878-52079917)
chr3 (164-202)||(16010751-16010789)
chr3 (214-297)||(23753572-23753655)
chr3 (168-202)||(29029898-29029932)
chr3 (164-202)||(33808082-33808120)
chr3 (232-297)||(54625547-54625612)
[»] chr4 (24 HSPs)
chr4 (164-297)||(41881269-41881402)
chr4 (165-297)||(24131158-24131289)
chr4 (164-297)||(22201903-22202035)
chr4 (164-256)||(1044698-1044789)
chr4 (164-297)||(25331019-25331151)
chr4 (165-297)||(28541587-28541718)
chr4 (164-248)||(42786655-42786739)
chr4 (165-297)||(37046638-37046769)
chr4 (164-291)||(30009869-30009995)
chr4 (211-290)||(25504832-25504911)
chr4 (211-297)||(19741094-19741180)
chr4 (167-297)||(31314914-31315043)
chr4 (175-297)||(32951022-32951143)
chr4 (166-297)||(1112784-1112913)
chr4 (164-297)||(40537331-40537463)
chr4 (165-256)||(7250000-7250090)
chr4 (166-256)||(46635869-46635959)
chr4 (211-254)||(23464889-23464932)
chr4 (164-297)||(39479543-39479675)
chr4 (214-297)||(20021281-20021364)
chr4 (211-256)||(34228809-34228854)
chr4 (164-297)||(41320638-41320768)
chr4 (167-255)||(53275727-53275814)
chr4 (220-256)||(49469264-49469300)
[»] chr2 (17 HSPs)
chr2 (164-297)||(20605042-20605174)
chr2 (163-297)||(35316951-35317084)
chr2 (163-297)||(16269580-16269713)
chr2 (164-297)||(24776245-24776377)
chr2 (164-297)||(31170812-31170944)
chr2 (161-297)||(44765662-44765797)
chr2 (164-256)||(305695-305787)
chr2 (166-297)||(14198765-14198894)
chr2 (165-297)||(22551951-22552082)
chr2 (164-290)||(9120058-9120183)
chr2 (164-297)||(1789332-1789464)
chr2 (164-297)||(12407270-12407402)
chr2 (176-297)||(32125152-32125272)
chr2 (219-297)||(20605180-20605258)
chr2 (223-297)||(5093235-5093309)
chr2 (164-297)||(26601388-26601520)
chr2 (169-202)||(5093319-5093352)
[»] chr1 (20 HSPs)
chr1 (164-297)||(953701-953833)
chr1 (164-297)||(22183252-22183384)
chr1 (164-297)||(730031-730162)
chr1 (167-297)||(47654538-47654669)
chr1 (163-297)||(35279553-35279686)
chr1 (164-297)||(28824558-28824690)
chr1 (164-292)||(45760201-45760328)
chr1 (161-297)||(49198454-49198588)
chr1 (164-297)||(21222030-21222161)
chr1 (164-256)||(19452077-19452168)
chr1 (211-297)||(14494137-14494223)
chr1 (219-297)||(19451994-19452072)
chr1 (164-256)||(6304481-6304572)
chr1 (164-297)||(49417966-49418098)
chr1 (165-256)||(47780502-47780592)
chr1 (164-256)||(50192778-50192869)
chr1 (165-297)||(35679314-35679445)
chr1 (232-297)||(45535893-45535958)
chr1 (164-202)||(28541386-28541424)
chr1 (170-297)||(48524208-48524333)
[»] chr6 (5 HSPs)
chr6 (164-297)||(29076485-29076618)
chr6 (164-297)||(29111458-29111591)
chr6 (164-297)||(2300923-2301055)
chr6 (164-297)||(6197663-6197795)
chr6 (165-297)||(1391513-1391644)
[»] chr5 (14 HSPs)
chr5 (164-297)||(21146956-21147088)
chr5 (165-291)||(33656234-33656359)
chr5 (164-256)||(7016923-7017014)
chr5 (164-247)||(43319135-43319218)
chr5 (165-297)||(6460682-6460813)
chr5 (165-297)||(27459134-27459265)
chr5 (176-297)||(32158083-32158204)
chr5 (214-297)||(139211-139294)
chr5 (167-297)||(5273146-5273276)
chr5 (167-253)||(9689553-9689637)
chr5 (211-248)||(849166-849203)
chr5 (211-256)||(14465452-14465497)
chr5 (38-79)||(39546082-39546123)
chr5 (166-202)||(16894138-16894174)
[»] scaffold0037 (1 HSPs)
scaffold0037 (164-297)||(100100-100232)
[»] scaffold0151 (1 HSPs)
scaffold0151 (165-248)||(38755-38837)
[»] scaffold0400 (1 HSPs)
scaffold0400 (211-297)||(15219-15305)
[»] scaffold0365 (1 HSPs)
scaffold0365 (211-297)||(15862-15948)
[»] scaffold0651 (1 HSPs)
scaffold0651 (167-297)||(8654-8783)
[»] scaffold0276 (1 HSPs)
scaffold0276 (219-297)||(725-803)
[»] scaffold0113 (1 HSPs)
scaffold0113 (164-249)||(39087-39171)
[»] scaffold0004 (1 HSPs)
scaffold0004 (165-202)||(102026-102063)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 43399869 - 43400028
Alignment:
Q  6 caagtgcaaccagcacggtattagatgggttg--tttcatgcatgttattgtgatctattctatctatctatgaatctcatgcaaatatactctatttaa 103  Q
    ||||||||||||||||||||||||||| | |   |||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  43399869 caagtgcaaccagcacggtattagatgtgcttaatttcatgcatgttattgtcatctattctatttatctatgaatttcatgcatatatactctatttaa 43399968  T
Q  104 ttcatggattttaattctgtaatatgctaagactcttctttaatacttttctttgattta 163  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43399969 ttcatgcattttaattctttaatatgctaagactcttctttaatacttttctttgattta 43400028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 167 - 297
Target Start/End: Original strand, 41478989 - 41479118
Alignment:
Q  167 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngtt 266  Q
    ||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||       |||    
T  41478989 gtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaagtt 41479087  T
Q  267 ttgtgttattcaatcaaaattctttggcatt 297  Q
    ||||||||||||||||| |||||||| ||||    
T  41479088 ttgtgttattcaatcaagattctttgtcatt 41479118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 23115485 - 23115353
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||           
T  23115485 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 23115387  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  23115386 gtcttgtgttattcaatcaagattctttgtcatt 23115353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 291
Target Start/End: Complemental strand, 42735594 - 42735468
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||           
T  42735594 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 42735496  T
Q  264 gttttgtgttattcaatcaaaattcttt 291  Q
    || ||||||||||||||||| |||||||    
T  42735495 gtcttgtgttattcaatcaagattcttt 42735468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 297
Target Start/End: Original strand, 43959549 - 43959679
Alignment:
Q  167 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngtt 266  Q
    |||||||||||||||||| ||| |||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||       ||     
T  43959549 gtgtatttgatcatgattttaaaggattttaaaagactttttttatcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaagtc 43959648  T
Q  267 ttgtgttattcaatcaaaattctttggcatt 297  Q
    ||||||||||||||||| |||||||| ||||    
T  43959649 ttgtgttattcaatcaagattctttgtcatt 43959679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 7507215 - 7507125
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    ||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||    
T  7507215 gggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaattt 7507125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 5576938 - 5576806
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||| ||||||||||||||||||||||||         |||||| | |||||||||| |||||||||||||||||||||||||           
T  5576938 ggggtgtattggattatgattctaagggattttaaaagatttttttg-tcatgaaatagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 5576840  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  5576839 gtcttgtgttattcaatcaagattctttgtcatt 5576806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 2705136 - 2705004
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| |||||||||| ||| |||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||| ||           
T  2705136 ggggtgtattggatcatgattgtaaaggattttaaaagattttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaaattaaaaaaa 2705038  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  2705037 gtcttgtgttattcaatcaagattctttgtcatt 2705004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 297
Target Start/End: Complemental strand, 26374741 - 26374615
Alignment:
Q  168 tgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttt 267  Q
    |||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||  |||||||||||||||||||||||||       |  |    
T  26374741 tgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtgatattcaatcaagactctttccaatttaaaaaaag--t 26374645  T
Q  268 tgtgttattcaatcaaaattctttggcatt 297  Q
    |||||||||||||||| |||||||| ||||    
T  26374644 tgtgttattcaatcaagattctttgtcatt 26374615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 32711599 - 32711467
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||| || |||||||||        ||||||| ||||| |||||| |||||||||||||||||| ||||||           
T  32711599 ggggtgtattggatcatgattctaagagactttaaaagactttttt-atcatgaaaaagttttgtggtattcaatcaagactcttttcaatttaaaaaaa 32711501  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  32711500 gtcttgtgttattcaatcaagattctttgtcatt 32711467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 26373705 - 26373782
Alignment:
Q  175 gatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaa 253  Q
    ||||||||||||||||||||||||||||        ||||||| |||||||||||| ||||||||||||||||||||||    
T  26373705 gatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaa 26373782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 24214909 - 24214817
Alignment:
Q  163 aggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    ||||||||||| |||||||||||||| |||||||||||||        ||||| | |||||||||||| |||||||||||||||||| ||||||    
T  24214909 aggggtgtattggatcatgattctaaaggattttaaaaga-cttttttatcataaaaaagtcttgtggtattcaatcaagactcttttcaattt 24214817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 8543408 - 8543539
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaag---actctttccaatttnnnn 260  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||| | ||||| |||||| |||||||||||   ||||||| ||||||        
T  8543408 ggggtgtattagatcatgattctaagggattttaaaagattttttttatcataaaaaagttttgtggtattcaatcaagatcactcttttcaatttaaaa 8543507  T
Q  261 nnngttttgtgttattcaatcaaaattctttg 292  Q
       || |||||||||| |||||| ||||||||    
T  8543508 aaagtgttgtgttatttaatcaagattctttg 8543539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 42938386 - 42938302
Alignment:
Q  213 catgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    ||||| |||||||||||| |||||||||||||||||| ||||||       || ||||||||||||||||| ||| |||| ||||    
T  42938386 catgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaagtcttgtgttattcaatcaagattatttgtcatt 42938302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 24502088 - 24502004
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactcttt 249  Q
    |||||||||| |||||||||||||| |||||||||||||        ||||||| |||||||||||  |||||||||||| |||||    
T  24502088 ggggtgtattggatcatgattctaaaggattttaaaaga-cttttttatcatgaaaaagtcttgtgttattcaatcaagattcttt 24502004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 42937250 - 42937325
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaa 241  Q
    ||||||||| |||||||||| |||||||||||||||||        ||||||| |||||||||||| ||||||||||    
T  42937250 gggtgtattggatcatgattttaagggattttaaaaga-cttttttatcatgaaaaagtcttgtggtattcaatcaa 42937325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 165 - 297
Target Start/End: Original strand, 973074 - 973206
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnng 264  Q
    ||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||       |    
T  973074 gggtgtattggatcatgattctaagggattttaaaagattttttttatcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaag 973173  T
Q  265 ttttgtgttattcaatcaaaattctttggcatt 297  Q
    ||||||||||||||||||| |||||||| ||||    
T  973174 ttttgtgttattcaatcaagattctttgtcatt 973206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 44343713 - 44343581
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||           
T  44343713 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 44343615  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  44343614 gtcttgtgttattcaatcaagattctttgtcatt 44343581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 30440686 - 30440818
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||| |||||||| |||||||||||||||||||||||||           
T  30440686 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaaatcttgtggtattcaatcaagactctttccaatttaaaaaaa 30440784  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  30440785 gtcttgtgttattcaatcaagattctttgtcatt 30440818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 18915052 - 18914925
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| |||||||  |||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||           
T  18915052 ggggtgtattggatcatgtatctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaattttaaaaaa 18914954  T
Q  264 gttttgtgttattcaatcaaaattctttg 292  Q
    || ||||||||||||||||||||||||||    
T  18914953 gtcttgtgttattcaatcaaaattctttg 18914925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 43679358 - 43679451
Alignment:
Q  163 aggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    |||| |||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||    
T  43679358 agggatgtattggatcatgattctaagggattttaaaagattttttttatcatgaaaaagtcttgtggtattcaatcaagactctttccaattt 43679451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 12893298 - 12893430
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| |||||||||||||||| |||||||||||         |||||| |||||||||||| |||||||||||||||||||||||||           
T  12893298 ggggtgtattggatcatgattctaaggtattttaaaagatttttttt-tcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 12893396  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  12893397 gtcttgtgttattcaatcaagattctttgtcatt 12893430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 40996967 - 40996834
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| |||||||||||||||||||||||||| |        ||||||| | |||||||||| |||||||||||||||||||||||||           
T  40996967 ggggtgtattggatcatgattctaagggattttaaaatattttttttatcatgaaagagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 40996868  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || | ||||||||||||||| |||||||| ||||    
T  40996867 gtctcgtgttattcaatcaagattctttgtcatt 40996834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 8078285 - 8078417
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||| | |||||||||||| |||||||||||||||||||||||||           
T  8078285 ggggtgtattggatcatgattctaagggattttaaaaga-cttttttatcataaaaaagtcttgtggtattcaatcaagactctttccaattttaaaaaa 8078383  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
      |||||||||||||||||| |||||||| ||||    
T  8078384 aatttgtgttattcaatcaagattctttgtcatt 8078417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 297
Target Start/End: Complemental strand, 43581406 - 43581275
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnng 264  Q
    ||||||||| |||||||||||||| | |||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||       |    
T  43581406 gggtgtattggatcatgattctaaagaattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaag 43581308  T
Q  265 ttttgtgttattcaatcaaaattctttggcatt 297  Q
    | ||||||||||||||||| |||||||| ||||    
T  43581307 tcttgtgttattcaatcaagattctttgtcatt 43581275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 165 - 297
Target Start/End: Original strand, 31638766 - 31638897
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnng 264  Q
    |||||||||  |||||||||||||| ||||||||||||        ||||||| |||||| ||||| |||||||||||||||||| ||||||       |    
T  31638766 gggtgtattgaatcatgattctaagagattttaaaagactttttt-atcatgaaaaagtcatgtggtattcaatcaagactcttttcaatttaaaaaaag 31638864  T
Q  265 ttttgtgttattcaatcaaaattctttggcatt 297  Q
    | |||||||||||||||||||||||||| ||||    
T  31638865 tcttgtgttattcaatcaaaattctttgtcatt 31638897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 32143235 - 32143145
Alignment:
Q  166 ggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    |||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||  ||||||||||||||||||| |||||    
T  32143235 ggtgtattggatcatgattctaagggattttaaaagactttttttatcatgaaaaagtcttgtgatattcaatcaagactctttctaattt 32143145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 297
Target Start/End: Original strand, 727405 - 727534
Alignment:
Q  167 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngtt 266  Q
    ||||||| |||||||||||||| |||||||||| ||        ||||||| ||||||||| || |||||||||||||||||| ||||||       ||     
T  727405 gtgtattggatcatgattctaatggattttaaatgactttttt-atcatgaaaaagtcttgcggtattcaatcaagactcttttcaatttaaaaaaagtc 727503  T
Q  267 ttgtgttattcaatcaaaattctttggcatt 297  Q
    |||||||||||||||||||||||||| ||||    
T  727504 ttgtgttattcaatcaaaattctttgtcatt 727534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 34695121 - 34695212
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    ||||||||||  |||||||||||||||||||||||||||        || |||| |||||||||||| |||||||||||||||||||||||||    
T  34695121 ggggtgtattgaatcatgattctaagggattttaaaagactttttt-attatgaaaaagtcttgtggtattcaatcaagactctttccaattt 34695212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 39219651 - 39219561
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    ||||||||| |||||| ||||||||| |||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||    
T  39219651 gggtgtattggatcataattctaaggaattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaattt 39219561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 297
Target Start/End: Original strand, 47879059 - 47879190
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnng 264  Q
    |||||||||  |||||||||||||||||||||||||||        || |||| |||||||||||| |||||||||| ||||||| ||||||       |    
T  47879059 gggtgtattgaatcatgattctaagggattttaaaagacttattt-ataatgaaaaagtcttgtggtattcaatcaatactcttttcaattttaaaaaag 47879157  T
Q  265 ttttgtgttattcaatcaaaattctttggcatt 297  Q
    | ||||||||||||||||| |||||||| ||||    
T  47879158 tcttgtgttattcaatcaagattctttgtcatt 47879190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 297
Target Start/End: Original strand, 47914157 - 47914288
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnng 264  Q
    |||||||||  |||||||||||||||||||||||||||        || |||| |||||||||||| |||||||||| ||||||| ||||||       |    
T  47914157 gggtgtattgaatcatgattctaagggattttaaaagacttattt-ataatgaaaaagtcttgtggtattcaatcaatactcttttcaattttaaaaaag 47914255  T
Q  265 ttttgtgttattcaatcaaaattctttggcatt 297  Q
    | ||||||||||||||||| |||||||| ||||    
T  47914256 tcttgtgttattcaatcaagattctttgtcatt 47914288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 20275577 - 20275489
Alignment:
Q  167 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    ||||||| ||||||||||||||||||||||||||||        |||||||  ||||||||||| |||||||||||| ||||||||||||    
T  20275577 gtgtattggatcatgattctaagggattttaaaaga-cttttttatcatgaataagtcttgtggtattcaatcaagattctttccaattt 20275489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 34008905 - 34009034
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||   ||| |||||||||||||||||| ||||||           
T  34008905 ggggtgtattggatcatgattctaagggattttaaaaga-tttttttatcatgaaaaagtc---tggtattcaatcaagactcttttcaatttaaaaaaa 34009000  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| ||| |||| ||||    
T  34009001 gtcttgtgttattcaatcaagattatttgtcatt 34009034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 34695217 - 34695295
Alignment:
Q  219 aaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    |||||||||||| |||||||||||||||||||||||||       || ||||||||||||||||| |||| ||| ||||    
T  34695217 aaagtcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattccttgtcatt 34695295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 7719532 - 7719445
Alignment:
Q  211 atcatgataaagtcttgtgggattcaatcaa-gactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    ||||||| ||| |||||||| |||||||||| |||||||||||||||       || ||||||||||||||||| ||| |||| ||||    
T  7719532 atcatgaaaaattcttgtggtattcaatcaaagactctttccaatttaaaaaaagtcttgtgttattcaatcaatattatttgtcatt 7719445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 20498098 - 20498229
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||           
T  20498098 ggggtgtattggatcatgattctaagggattttaaaagacttttt--atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 20498195  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    |||||||||||||||||||| |||||||| ||||    
T  20498196 gttttgtgttattcaatcaagattctttgtcatt 20498229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 19253715 - 19253847
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    ||||| |||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||           
T  19253715 ggggtttattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 19253813  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  19253814 gtcttgtgttattcaatcaagattctttgtcatt 19253847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 996403 - 996313
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatt 255  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| ||||||||||||||||||||||||    
T  996403 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatt 996313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 297
Target Start/End: Complemental strand, 37820794 - 37820663
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnng 264  Q
    |||| |||| ||| ||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||       |    
T  37820794 gggtatattggataatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaag 37820696  T
Q  265 ttttgtgttattcaatcaaaattctttggcatt 297  Q
    | ||||||||||||||||| |||||||| ||||    
T  37820695 tcttgtgttattcaatcaagattctttgtcatt 37820663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 291
Target Start/End: Complemental strand, 3206514 - 3206388
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||| ||||||           
T  3206514 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaa 3206416  T
Q  264 gttttgtgttattcaatcaaaattcttt 291  Q
    || ||||| ||||||||||| |||||||    
T  3206415 gtcttgtggtattcaatcaagattcttt 3206388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 35337622 - 35337755
Alignment:
Q  164 ggggtgtatttga-tcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnn 262  Q
    ||||||||||||| ||||||||||||||||||||||||||        || |||| |||||||||||| |||||||||||||||||||||||||          
T  35337622 ggggtgtatttgaatcatgattctaagggattttaaaagactttttt-attatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaa 35337720  T
Q  263 ngttttgtgttattcaatcaaaattctttggcatt 297  Q
     || ||||||||||||||||| |||| ||| ||||    
T  35337721 agtcttgtgttattcaatcaagattccttgtcatt 35337755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 164 - 288
Target Start/End: Complemental strand, 10139464 - 10139341
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    ||||||||||  ||||||||||||||||||||||||| |        ||||||| |||||||||||| |||||||||||||||||||||||||           
T  10139464 ggggtgtattgaatcatgattctaagggattttaaaatactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 10139366  T
Q  264 gttttgtgttattcaatcaaaattc 288  Q
    || ||||||||||||||||| ||||    
T  10139365 gtcttgtgttattcaatcaagattc 10139341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 297
Target Start/End: Original strand, 6589455 - 6589584
Alignment:
Q  168 tgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttt 267  Q
    |||||| |||||||||||||||||| |||||||||        ||||||| |||||||||||| ||||||| ||||||||||| |||||       || |    
T  6589455 tgtattggatcatgattctaagggactttaaaagactttttttatcatgaaaaagtcttgtggtattcaattaagactctttctaatttaaaaaaagtct 6589554  T
Q  268 tgtgttattcaatcaaaattctttggcatt 297  Q
    |||||||||||||||| |||| ||| ||||    
T  6589555 tgtgttattcaatcaatattccttgtcatt 6589584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 12734158 - 12734076
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactct 247  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| ||||||||||||||||    
T  12734158 ggggtgtattggatcatgattctaagggattttaaaaga-cttttttatcatgaaaaagtcttgtggtattcaatcaagactct 12734076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 22057651 - 22057781
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||| |||||| ||||||||     ||||||||||||           
T  22057651 ggggtgtattggatcatgattctaagggattttaaaagactttttttatcatgaaaaagtattgtggtattcaatc---gttctttccaatttaaaaaaa 22057747  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  22057748 gtcttgtgttattcaatcaagattctttgtcatt 22057781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 297
Target Start/End: Complemental strand, 44762306 - 44762223
Alignment:
Q  214 atgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    |||| |||||||||||| |||||||||||||||||| ||||||       || ||||||||||||||||| |||||||| ||||    
T  44762306 atgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcatt 44762223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 52114413 - 52114494
Alignment:
Q  159 atttaggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaa 241  Q
    ||||||||||||| | |||||||||||||||| |||||||||||        |||||||||||||||||||| ||||||||||    
T  52114413 atttaggggtgtactggatcatgattctaaggaattttaaaaga-tttttttatcatgataaagtcttgtggtattcaatcaa 52114494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 40246732 - 40246817
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttc 250  Q
    |||||||||| ||||||||||||||| |||||||||| |        ||| ||| |||||||||||| |||||||||||||||||||    
T  40246732 ggggtgtattggatcatgattctaagagattttaaaa-aacttttttatcgtgaaaaagtcttgtggtattcaatcaagactctttc 40246817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 1440224 - 1440139
Alignment:
Q  211 atcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    ||||||| |||||||||||| |||||||||||||| ||| ||||||       || ||||||||||||||||| |||||||| ||||    
T  1440224 atcatgaaaaagtcttgtggtattcaatcaagactattttcaattt-aaaaaagtcttgtgttattcaatcaagattctttgtcatt 1440139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 6131484 - 6131440
Alignment:
Q  211 atcatgataaagtcttgtgggattcaatcaagactctttccaatt 255  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||    
T  6131484 atcatgaaaaagttttgtggtattcaatcaagactctttccaatt 6131440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 29449178 - 29449090
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaa 253  Q
    |||||||||| |||||||||| |||||||||||||||||        || |||| ||| |||||||| |||||||||| |||||||||||    
T  29449178 ggggtgtattagatcatgattataagggattttaaaaga-cttttttattatgaaaaaatcttgtggtattcaatcaatactctttccaa 29449090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 33996810 - 33996771
Alignment:
Q  163 aggggtgtatttgatcatgattctaagggattttaaaaga 202  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  33996810 aggggtgtattggatcatgattctaagggattttgaaaga 33996771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 52079878 - 52079917
Alignment:
Q  161 ttaggggtgtatttgatcatgattctaagggattttaaaa 200  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  52079878 ttaggggtgtattggatcatgattctaagtgattttaaaa 52079917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 16010751 - 16010789
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaaga 202  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  16010751 ggggtgtattggatcataattctaagggattttaaaaga 16010789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 297
Target Start/End: Complemental strand, 23753655 - 23753572
Alignment:
Q  214 atgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    |||| |||||||||||| |||||||||||||| ||| ||||||       || ||||| ||||||||||| |||||||| ||||    
T  23753655 atgaaaaagtcttgtggtattcaatcaagactttttgcaatttaaaaaaagtcttgtggtattcaatcaagattctttgtcatt 23753572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 202
Target Start/End: Original strand, 29029898 - 29029932
Alignment:
Q  168 tgtatttgatcatgattctaagggattttaaaaga 202  Q
    |||||| ||||||||||||||||||||||||||||    
T  29029898 tgtattggatcatgattctaagggattttaaaaga 29029932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 33808120 - 33808082
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaaga 202  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  33808120 ggggtgtattgaatcatgattctaagggattttaaaaga 33808082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 54625547 - 54625612
Alignment:
Q  232 attcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    |||||||||||||||||||||||||       || ||||||||||||||||| |||| ||| ||||    
T  54625547 attcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaatattcgttgtcatt 54625612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 41881402 - 41881269
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| |||||||||| |||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||           
T  41881402 ggggtgtattggatcatgattttaagggattttaaaagactttttttatcatgaaaaagtcttgtggtattcaatcaagactctttccaattttaaaaaa 41881303  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  41881302 gtcttgtgttattcaatcaagattctttgtcatt 41881269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 165 - 297
Target Start/End: Complemental strand, 24131289 - 24131158
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnng 264  Q
    ||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||       |    
T  24131289 gggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaag 24131191  T
Q  265 ttttgtgttattcaatcaaaattctttggcatt 297  Q
    | ||||||||||||||||| |||||||| ||||    
T  24131190 tcttgtgttattcaatcaagattctttgtcatt 24131158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 22201903 - 22202035
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||  |||||||||||||||||||||||||           
T  22201903 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtgatattcaatcaagactctttccaatttaaaaaaa 22202001  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  22202002 gtcttgtgttattcaatcaagattctttgtcatt 22202035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 1044698 - 1044789
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||    
T  1044698 ggggtgtattggatcatgattctaagggattttaaaagattttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaattt 1044789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 25331019 - 25331151
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||  ||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||           
T  25331019 ggggtgtattggatcatgattctaaaagattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 25331117  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  25331118 gtcttgtgttattcaatcaagattctttgtcatt 25331151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 297
Target Start/End: Original strand, 28541587 - 28541718
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnng 264  Q
    ||||||||| ||||||||||||||||||||||||||||        || |||| |||||||||||| |||||||||||||||||| ||||||       |    
T  28541587 gggtgtattggatcatgattctaagggattttaaaagacattttt-attatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaag 28541685  T
Q  265 ttttgtgttattcaatcaaaattctttggcatt 297  Q
    | ||||||||||||||||| |||||||| ||||    
T  28541686 tcttgtgttattcaatcaagattctttgtcatt 28541718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 42786655 - 42786739
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctt 248  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||    
T  42786655 ggggtgtattggatcatgattctaagggattttaaaagactttttttatcatgaaaaagtcttgtggtattcaatcaagactctt 42786739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 165 - 297
Target Start/End: Complemental strand, 37046769 - 37046638
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnng 264  Q
    ||||||||| |||||||||||||||| |||||||||||        ||||| | |||||||||||| |||||||||||||||||| ||||||       |    
T  37046769 gggtgtattggatcatgattctaaggaattttaaaagatattttt-atcataaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaag 37046671  T
Q  265 ttttgtgttattcaatcaaaattctttggcatt 297  Q
    | ||||||||||||||||| |||||||| ||||    
T  37046670 tcttgtgttattcaatcaagattctttgtcatt 37046638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 291
Target Start/End: Complemental strand, 30009995 - 30009869
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        || |||| |||||||| | | |||||||||||||||||||||||||           
T  30009995 ggggtgtattggatcatgattctaagggattttaaaaga-catttttattatgaaaaagtcttattgtattcaatcaagactctttccaatttaaaaaaa 30009897  T
Q  264 gttttgtgttattcaatcaaaattcttt 291  Q
    || |||||||||| ||||||||||||||    
T  30009896 gtcttgtgttatttaatcaaaattcttt 30009869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 290
Target Start/End: Complemental strand, 25504911 - 25504832
Alignment:
Q  211 atcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctt 290  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||       || ||||||||||||||||| ||||||    
T  25504911 atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctt 25504832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 19741180 - 19741094
Alignment:
Q  211 atcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||       || ||||||||||||||||| |||||||| ||||    
T  19741180 atcatgaaaaaatcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcatt 19741094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 297
Target Start/End: Complemental strand, 31315043 - 31314914
Alignment:
Q  167 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngtt 266  Q
    ||||||| ||||||||||||||||||||||||||||        ||||||| ||||| |||||| |||||||||||||| ||| ||||||       ||     
T  31315043 gtgtattggatcatgattctaagggattttaaaaga-tttttttatcatgaaaaagtattgtggtattcaatcaagacttttttcaatttaaaaaaagtc 31314945  T
Q  267 ttgtgttattcaatcaaaattctttggcatt 297  Q
    |||||||||| |||||| |||||||| ||||    
T  31314944 ttgtgttatttaatcaagattctttgtcatt 31314914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 297
Target Start/End: Complemental strand, 32951143 - 32951022
Alignment:
Q  175 gatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgtta 274  Q
    ||||||||||||||||||||||||||||        || |||| |||||||||||| |||||||||||||||||| ||||||       || ||||||||    
T  32951143 gatcatgattctaagggattttaaaagactttttt-ataatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaagtcttgtgtta 32951045  T
Q  275 ttcaatcaaaattctttggcatt 297  Q
    ||||||||| ||| |||| ||||    
T  32951044 ttcaatcaagattatttgtcatt 32951022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 297
Target Start/End: Original strand, 1112784 - 1112913
Alignment:
Q  166 ggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngt 265  Q
    |||||||| |||||||||||||||  |||||||||||        ||||||| |||||||||||  |||||||||||||||||||| ||||       ||    
T  1112784 ggtgtattggatcatgattctaag--attttaaaagactttttttatcatgaaaaagtcttgtgttattcaatcaagactctttccgatttaaaaaaagt 1112881  T
Q  266 tttgtgttattcaatcaaaattctttggcatt 297  Q
     |||| |||||||||||| |||||||| ||||    
T  1112882 attgtattattcaatcaagattctttgtcatt 1112913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 40537463 - 40537331
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| |||||||||| |||||||||||||||||        ||||| | |||||||||||| ||||||| ||||||||||| |||||           
T  40537463 ggggtgtattggatcatgattgtaagggattttaaaaga-cttttgtatcataaaaaagtcttgtggtattcaattaagactctttctaatttaaaaaaa 40537365  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| | |||||| ||||    
T  40537364 gtcttgtgttattcaatcaagactctttgtcatt 40537331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 7250090 - 7250000
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    ||||||||| |||||||||||||||| |||||||||||        ||||||| ||| |||||||| |||||||||||||||||| ||||||    
T  7250090 gggtgtattggatcatgattctaaggaattttaaaagactttttt-atcatgaaaaaatcttgtggtattcaatcaagactcttttcaattt 7250000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 46635959 - 46635869
Alignment:
Q  166 ggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaa-gtcttgtgggattcaatcaagactctttccaattt 256  Q
    |||||||| ||||||||||||||| ||||||||||||        ||||||| ||| ||||||||| |||||||||||||||||||||||||    
T  46635959 ggtgtattggatcatgattctaagagattttaaaagactttttt-atcatgaaaaaagtcttgtggtattcaatcaagactctttccaattt 46635869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 23464889 - 23464932
Alignment:
Q  211 atcatgataaagtcttgtgggattcaatcaagactctttccaat 254  Q
    ||||||| |||||||||||| |||||||||||||||||||||||    
T  23464889 atcatgaaaaagtcttgtggtattcaatcaagactctttccaat 23464932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 39479675 - 39479543
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| |||||||||| ||||  |||||||||||        ||||| | |||||||||||| |||||||||||||||||| ||||||           
T  39479675 ggggtgtattggatcatgattttaagaaattttaaaagactttttt-atcataaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaa 39479577  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||| ||| ||||    
T  39479576 gtcttgtgttattcaatcaagattccttgtcatt 39479543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 20021281 - 20021364
Alignment:
Q  214 atgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    |||| |||||||||||| ||| |||||||||||||| ||||||       |||||||| ||||||||||| |||||||| ||||    
T  20021281 atgaaaaagtcttgtggtatttaatcaagactctttgcaatttaaaaaaagttttgtggtattcaatcaagattctttgtcatt 20021364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 34228854 - 34228809
Alignment:
Q  211 atcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    ||||||| |||||||||||| |||||||||||||||||| ||||||    
T  34228854 atcatgaaaaagtcttgtggtattcaatcaagactcttttcaattt 34228809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 41320638 - 41320768
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||  ||||||||||||        || |||| ||||||  |||| |||||||||||||| ||||||||||           
T  41320638 ggggtgtattggatcatgattctaaaagattttaaaagattttttt-attatgaaaaagtc--gtggtattcaatcaagactgtttccaatttaaaaaat 41320734  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  41320735 gtcttgtgttattcaatcaagattctttgtcatt 41320768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 53275727 - 53275814
Alignment:
Q  167 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatt 255  Q
    ||||||| |||||||||||||||| ||||||||| |        ||||||| ||| |||||  ||||||||||||||||||||||||||    
T  53275727 gtgtattggatcatgattctaaggaattttaaaa-aatatttttatcatgaaaaaatcttgcaggattcaatcaagactctttccaatt 53275814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 49469264 - 49469300
Alignment:
Q  220 aagtcttgtgggattcaatcaagactctttccaattt 256  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  49469264 aagtcttgtggtatttaatcaagactctttccaattt 49469300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 20605042 - 20605174
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||           
T  20605042 ggggtgtattggatcatgattctaagggattttaaaagacttttta-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 20605140  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  20605141 gtcttgtgttattcaatcaagattctttgtcatt 20605174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 297
Target Start/End: Original strand, 35316951 - 35317084
Alignment:
Q  163 aggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnn 262  Q
    |||||||||||  ||||||||||||||||||||||||| |        ||||||| |||||||||||| |||||||||||||||||||||||||          
T  35316951 aggggtgtattgaatcatgattctaagggattttaaaa-aacttttttatcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaa 35317049  T
Q  263 ngttttgtgttattcaatcaaaattctttggcatt 297  Q
     |||||||||||||||||||| |||||||| ||||    
T  35317050 agttttgtgttattcaatcaagattctttgtcatt 35317084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 163 - 297
Target Start/End: Original strand, 16269580 - 16269713
Alignment:
Q  163 aggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnn 262  Q
    ||||||||||| ||||||||||||||||||||||||||||        || |||| |||||||||||| |||||||||||||||||||||||||          
T  16269580 aggggtgtattggatcatgattctaagggattttaaaagactttttt-attatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaa 16269678  T
Q  263 ngttttgtgttattcaatcaaaattctttggcatt 297  Q
     || ||||||||||||||||| |||||||| ||||    
T  16269679 agtcttgtgttattcaatcaagattctttgtcatt 16269713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 24776245 - 24776377
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| ||||||||||||||||||| |||||           
T  24776245 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttctaatttaaaaaaa 24776343  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  24776344 gtcttgtgttattcaatcaagattctttgtcatt 24776377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 31170944 - 31170812
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||  |||||||||||||||||||||||||           
T  31170944 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtgatattcaatcaagactctttccaatttaaaaaaa 31170846  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  31170845 gtcttgtgttattcaatcaagattctttgtcatt 31170812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 297
Target Start/End: Original strand, 44765662 - 44765797
Alignment:
Q  161 ttaggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnn 260  Q
    |||| |||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||| ||||||||||||||        
T  44765662 ttagaggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaaaactctttccaatttaaaa 44765760  T
Q  261 nnngttttgtgttattcaatcaaaattctttggcatt 297  Q
       || ||||||||||||||||| |||||||| ||||    
T  44765761 aaagtcttgtgttattcaatcaagattctttgtcatt 44765797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 305787 - 305695
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    |||||||||| ||||||||||||||| ||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||    
T  305787 ggggtgtattggatcatgattctaagcgattttaaaagactttttttatcatgaaaaagtcttgtggtattcaatcaagactctttccaattt 305695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 297
Target Start/End: Complemental strand, 14198894 - 14198765
Alignment:
Q  166 ggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngt 265  Q
    |||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| ||||||||||||||||||| |||||       ||    
T  14198894 ggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttctaattt-aaaaaagt 14198797  T
Q  266 tttgtgttattcaatcaaaattctttggcatt 297  Q
     |||||||||||||||||||||||||| ||||    
T  14198796 cttgtgttattcaatcaaaattctttgtcatt 14198765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 297
Target Start/End: Complemental strand, 22552082 - 22551951
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnng 264  Q
    ||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||| | ||||||||||       |    
T  22552082 gggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagattttttccaatttaaaaaaag 22551984  T
Q  265 ttttgtgttattcaatcaaaattctttggcatt 297  Q
    | ||||||||||||||||| |||||||| ||||    
T  22551983 tcttgtgttattcaatcaagattctttgtcatt 22551951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 290
Target Start/End: Original strand, 9120058 - 9120183
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||| || ||||| |||||||||||||||||||||||||           
T  9120058 ggggtgtattggatcatgattctaagggattttaaaaga-cttttttatcatgaaaaaatcatgtggtattcaatcaagactctttccaattttaaaaaa 9120156  T
Q  264 gttttgtgttattcaatcaaaattctt 290  Q
    || ||||||||||||||||| ||||||    
T  9120157 gtcttgtgttattcaatcaagattctt 9120183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 1789332 - 1789464
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||| ||||||||||||        ||||| | |||||||||||| |||||||||| ||||||||||||||           
T  1789332 ggggtgtattggatcatgattctaagagattttaaaagattttttt-atcataaaaaagtcttgtggtattcaatcaaaactctttccaatttaaaaaaa 1789430  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  1789431 gtcttgtgttattcaatcaagattctttgtcatt 1789464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 12407270 - 12407402
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||| ||||||||||||        ||||||| |||||||||||| |||||||||||| ||||| ||||||           
T  12407270 ggggtgtattggatcatgattctaagagattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagattcttttcaattttaaaaaa 12407368  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  12407369 gtcttgtgttattcaatcaagattctttgtcatt 12407402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 297
Target Start/End: Original strand, 32125152 - 32125272
Alignment:
Q  176 atcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttat 275  Q
    ||||||||| |||||||||||||||||        || |||| |||||||||||| |||||||||||||||||| ||||||       || |||||||||    
T  32125152 atcatgattttaagggattttaaaagactttttt-ataatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaagtcttgtgttat 32125250  T
Q  276 tcaatcaaaattctttggcatt 297  Q
    ||||||||||||||||| ||||    
T  32125251 tcaatcaaaattctttgtcatt 32125272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 20605180 - 20605258
Alignment:
Q  219 aaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    |||||||||||| |||||||||||||||||||||||||       || ||||||||||||||||| |||||||| ||||    
T  20605180 aaagtcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcatt 20605258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 5093309 - 5093235
Alignment:
Q  223 tcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    |||||||| |||||||||||||||||||||||||       || ||||||||||||||||| |||||||| ||||    
T  5093309 tcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcatt 5093235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 26601520 - 26601388
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||| |||||| |||||||||||||        || || | |||||||||||| |||||||||| |||||||| |||||           
T  26601520 ggggtgtattggatcatgtttctaaaggattttaaaagactttttt-attattaaaaagtcttgtggtattcaatcaaaactctttctaatttaaaaaaa 26601422  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    ||||||||||||| |||||| | |||||| ||||    
T  26601421 gttttgtgttatttaatcaagactctttgtcatt 26601388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 5093352 - 5093319
Alignment:
Q  169 gtatttgatcatgattctaagggattttaaaaga 202  Q
    ||||| ||||||||||||||||||||||||||||    
T  5093352 gtattggatcatgattctaagggattttaaaaga 5093319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 953701 - 953833
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||           
T  953701 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 953799  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  953800 gtcttgtgttattcaatcaagattctttgtcatt 953833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 22183252 - 22183384
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| |||||||||||||| |||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||           
T  22183252 ggggtgtattggatcatgattctaaaggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 22183350  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    |||||||||||||||||||| |||||||| ||||    
T  22183351 gttttgtgttattcaatcaagattctttgtcatt 22183384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 730031 - 730162
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||         |||||| |||||||||||| |||||||||||||||||||||||||           
T  730031 ggggtgtattggatcatgattctaagggattttaaaagactttttt--tcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 730128  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  730129 gtcttgtgttattcaatcaagattctttgtcatt 730162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 297
Target Start/End: Complemental strand, 47654669 - 47654538
Alignment:
Q  167 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngt- 265  Q
    ||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||| ||||||||||||||||||||       ||     
T  47654669 gtgtattggatcatgattctaagggattttaaaagactttttttatcatgaaaaagtcttgtggtattcgatcaagactctttccaatttaaaaaaagtc 47654570  T
Q  266 tttgtgttattcaatcaaaattctttggcatt 297  Q
    |||||||||||||||||| |||||||| ||||    
T  47654569 tttgtgttattcaatcaagattctttgtcatt 47654538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 297
Target Start/End: Original strand, 35279553 - 35279686
Alignment:
Q  163 aggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnn 262  Q
    ||||||||||| ||||||||||||||| ||||||||||||        ||||||| |||||||||||| |||||||||||||||||||||||||          
T  35279553 aggggtgtattggatcatgattctaagagattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaa 35279651  T
Q  263 ngttttgtgttattcaatcaaaattctttggcatt 297  Q
     |  ||||||||||||||||| |||||||| ||||    
T  35279652 agacttgtgttattcaatcaagattctttgtcatt 35279686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 28824690 - 28824558
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| ||||||||||||||||||| |||||           
T  28824690 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttctaatttaaaaaaa 28824592  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| ||| |||| ||||    
T  28824591 gtcttgtgttattcaatcaagattatttgtcatt 28824558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 45760328 - 45760201
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||| ||||||| ||||||           
T  45760328 ggggtgtattggatcatgattctaagggattttaaaagattttttt-atcatgaaaaagtcttgtggtattcaatcaaaactcttttcaatttaaaaaaa 45760230  T
Q  264 gttttgtgttattcaatcaaaattctttg 292  Q
    || ||||||||||||||||| ||||||||    
T  45760229 gtcttgtgttattcaatcaagattctttg 45760201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 297
Target Start/End: Complemental strand, 49198588 - 49198454
Alignment:
Q  161 ttaggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnn 260  Q
    ||||||||||||| |||||||||||||||| |||||||||||        ||||||| |||||||||||| |||||||||||||||||| ||||||        
T  49198588 ttaggggtgtattggatcatgattctaaggaattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactcttttcaattt-aaa 49198491  T
Q  261 nnngttttgtgttattcaatcaaaattctttggcatt 297  Q
       || ||||||||||||||||| |||||||| ||||    
T  49198490 aaagtcttgtgttattcaatcaagattctttgtcatt 49198454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 21222030 - 21222161
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| |||||||||||||||||||||||||||         ||||||| |||||||||||| |||||||||||||||||| ||||||           
T  21222030 ggggtgtattggatcatgattctaagggattttaaaag-gcttttttatcatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaa 21222128  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    | |||||||||||||||||| |||||||| ||||    
T  21222129 g-tttgtgttattcaatcaagattctttgtcatt 21222161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 19452168 - 19452077
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    |||||||||| ||||||||||||||||||||||||||||        ||| ||| |||||||||||| |||||||||||||||||||||||||    
T  19452168 ggggtgtattggatcatgattctaagggattttaaaaga-cttttttatcttgaaaaagtcttgtggtattcaatcaagactctttccaattt 19452077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 14494137 - 14494223
Alignment:
Q  211 atcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||       || ||||||||||||||||| |||||||| ||||    
T  14494137 atcatgaaaaaatcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcatt 14494223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 19452072 - 19451994
Alignment:
Q  219 aaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    |||||||||||| |||||||||||||||||||||||||       || ||||||||||||||||| |||||||| ||||    
T  19452072 aaagtcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcatt 19451994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 6304572 - 6304481
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    |||||||||| |||||||||||||| |||||||||||||         |||||| |||||||||||| |||||||||||||| ||||||||||    
T  6304572 ggggtgtattggatcatgattctaaaggattttaaaagacttttttt-tcatgaaaaagtcttgtggtattcaatcaagactatttccaattt 6304481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 49417966 - 49418098
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    ||||| |||| ||||||||||||||| ||||||||||||        ||||||| |||||| ||||  |||||||||||||||||||||||||           
T  49417966 ggggtatattggatcatgattctaagagattttaaaagactttttt-atcatgaaaaagtcatgtgatattcaatcaagactctttccaatttagaaaaa 49418064  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||| ||| ||||    
T  49418065 gtcttgtgttattcaatcaagattcattgtcatt 49418098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 47780502 - 47780592
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    ||||||||| |||||||||||||||  |||||||||||        ||||||| |||||||||||| |||||||||||||||||| ||||||    
T  47780502 gggtgtattggatcatgattctaagaaattttaaaagattttttt-atcatgaaaaagtcttgtggtattcaatcaagactcttttcaattt 47780592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 50192869 - 50192778
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    ||||||||||  ||||||||||||||| |||||||||||        || |||| |||||||||||| |||||||||||| ||||||||||||    
T  50192869 ggggtgtattgaatcatgattctaaggaattttaaaagactttttt-attatgaaaaagtcttgtggtattcaatcaagattctttccaattt 50192778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 297
Target Start/End: Complemental strand, 35679445 - 35679314
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnng 264  Q
    |||||||||  ||||||||| |||||||||||||||||        || |||| |||||||||||| ||||||||||| |||||| ||||||       |    
T  35679445 gggtgtattgaatcatgattttaagggattttaaaagactttttt-ataatgaaaaagtcttgtggtattcaatcaaggctcttttcaatttaaaaaaag 35679347  T
Q  265 ttttgtgttattcaatcaaaattctttggcatt 297  Q
    | ||||| ||||||||||| |||||||| ||||    
T  35679346 tcttgtggtattcaatcaagattctttgtcatt 35679314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 45535893 - 45535958
Alignment:
Q  232 attcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    |||||||||||||||||||||||||       || ||||||||||||||||| |||||||| ||||    
T  45535893 attcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaatattctttgtcatt 45535958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 28541386 - 28541424
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaaga 202  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  28541386 ggggtgtattggatcatgattctaagcgattttaaaaga 28541424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 48524208 - 48524333
Alignment:
Q  170 tatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttg 269  Q
    |||| |||||||||||||||| |||||||||||        ||||| | ||||| |||  | |||||||||||||||||||||||||       || |||    
T  48524208 tattggatcatgattctaaggaattttaaaagacttttt--atcataaaaaagttttgcagtattcaatcaagactctttccaatttaaaaaaagtcttg 48524305  T
Q  270 tgttattcaatcaaaattctttggcatt 297  Q
    |||||||||||||| ||| |||| ||||    
T  48524306 tgttattcaatcaagattttttgtcatt 48524333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 29076485 - 29076618
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||| ||||||||||||        ||||||| |||||||||||  |||||||||||||||||||||||||           
T  29076485 ggggtgtattggatcatgattctaagagattttaaaagactttttttatcatgaaaaagtcttgtgatattcaatcaagactctttccaatttaaataaa 29076584  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  29076585 gtcttgtgttattcaatcaagattctttgtcatt 29076618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 29111458 - 29111591
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||| ||||||||||||        ||||||| |||||||||||  |||||||||||||||||||||||||           
T  29111458 ggggtgtattggatcatgattctaagagattttaaaagactttttttatcatgaaaaagtcttgtgatattcaatcaagactctttccaatttaaataaa 29111557  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  29111558 gtcttgtgttattcaatcaagattctttgtcatt 29111591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 2301055 - 2300923
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||| ||||||           
T  2301055 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaa 2300957  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  2300956 gtcttgtgttattcaatcaagattctttgtcatt 2300923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 6197795 - 6197663
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| |||||||||||||||||||||||||| |        ||||||| |||||| ||||| |||||||||||||||||||||||||           
T  6197795 ggggtgtattggatcatgattctaagggattttaaaa-aacttttttatcatgaaaaagtcgtgtggtattcaatcaagactctttccaatttaaaaaaa 6197697  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  6197696 gtcttgtgttattcaatcaagattctttgtcatt 6197663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 165 - 297
Target Start/End: Original strand, 1391513 - 1391644
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnng 264  Q
    ||||||||| |||||||||||||| |||||||||| ||        ||||||| |||||||||||| |||||||||||||||||||||||||       |    
T  1391513 gggtgtattggatcatgattctaaaggattttaaatgactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaag 1391611  T
Q  265 ttttgtgttattcaatcaaaattctttggcatt 297  Q
    | ||||||||||||||||| |||| ||| ||||    
T  1391612 tcttgtgttattcaatcaagattcattgtcatt 1391644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 21146956 - 21147088
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||| ||||| |||||||||||||||||||||||||           
T  21146956 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcgtgtggtattcaatcaagactctttccaatttaaaaaaa 21147054  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  21147055 gtcttgtgttattcaatcaagattctttgtcatt 21147088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 291
Target Start/End: Complemental strand, 33656359 - 33656234
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnng 264  Q
    ||||||||| |||||||||| |||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||| ||||||       |    
T  33656359 gggtgtattggatcatgattttaagggattttaaaagattttttt-atcatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaag 33656261  T
Q  265 ttttgtgttattcaatcaaaattcttt 291  Q
    | ||||||||||||||||| |||||||    
T  33656260 tcttgtgttattcaatcaagattcttt 33656234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 7017014 - 7016923
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||| ||||||    
T  7017014 ggggtgtattggatcatgattctaagggattttaaaaga-cttttttatcatgaaaaagtcttgtggtattcaatcaagactcttttcaattt 7016923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 43319135 - 43319218
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactct 247  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| ||||||||||||||||    
T  43319135 ggggtgtattggatcatgattctaagggattttaaaagactttttttatcatgaaaaagtcttgtggtattcaatcaagactct 43319218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 297
Target Start/End: Original strand, 6460682 - 6460813
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnng 264  Q
    |||||||||  |||||||||||||||||||||||||||        || |||| |||||||||||| |||||||||||||||||||||| ||       |    
T  6460682 gggtgtattgaatcatgattctaagggattttaaaagattttttt-ataatgaaaaagtcttgtggtattcaatcaagactctttccaacttaaaaaaag 6460780  T
Q  265 ttttgtgttattcaatcaaaattctttggcatt 297  Q
    | || |||||||||||||| |||||||| ||||    
T  6460781 tcttatgttattcaatcaagattctttgtcatt 6460813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 297
Target Start/End: Complemental strand, 27459265 - 27459134
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnng 264  Q
    ||||||||| |||||||||||||| ||||||||||| |        ||||||| ||||||| || | |||||||||||||||||||||||||       |    
T  27459265 gggtgtattggatcatgattctaacggattttaaaa-aacttttttatcatgaaaaagtctcgtagtattcaatcaagactctttccaatttaaaaaaag 27459167  T
Q  265 ttttgtgttattcaatcaaaattctttggcatt 297  Q
    | |||||||||||||| || |||||||| ||||    
T  27459166 tcttgtgttattcaattaagattctttgtcatt 27459134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 297
Target Start/End: Complemental strand, 32158204 - 32158083
Alignment:
Q  176 atcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaattt-nnnnnnngttttgtgtta 274  Q
    ||||||||||||||| |||||||||||        ||||||| |||||||||||| |||||||||||||||||| ||||||        || ||||||||    
T  32158204 atcatgattctaaggaattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaaagtcttgtgtta 32158106  T
Q  275 ttcaatcaaaattctttggcatt 297  Q
    ||||||||| |||||||| ||||    
T  32158105 ttcaatcaagattctttgtcatt 32158083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 139211 - 139294
Alignment:
Q  214 atgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    |||| |||||||| | | |||||||||||||||||| ||||||       |||||||||||||||||||| |||||||| ||||    
T  139211 atgaaaaagtcttttagtattcaatcaagactcttttcaatttaaaaaaagttttgtgttattcaatcaagattctttgtcatt 139294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 297
Target Start/End: Complemental strand, 5273276 - 5273146
Alignment:
Q  167 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaag-tcttgtgggattcaatcaagactctttccaatttnnnnnnngt 265  Q
    ||||||| |||||||||| |||||||||||||||||        ||||||| |||  |||||||| |||||||||||| ||||||||||||       ||    
T  5273276 gtgtattggatcatgattttaagggattttaaaagactttttt-atcatgaaaaaaatcttgtggtattcaatcaagattctttccaatttaaaaaaagt 5273178  T
Q  266 tttgtgttattcaatcaaaattctttggcatt 297  Q
     ||||||||||||||||| ||| |||| ||||    
T  5273177 cttgtgttattcaatcaagattttttgtcatt 5273146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 253
Target Start/End: Original strand, 9689553 - 9689637
Alignment:
Q  167 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaa 253  Q
    ||||||| ||| |||||||||||||||||||| |||        || |||| |||||||||||| ||||||||||||||||||||||    
T  9689553 gtgtattggattatgattctaagggattttaatagacttttt--attatgaaaaagtcttgtggtattcaatcaagactctttccaa 9689637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 849166 - 849203
Alignment:
Q  211 atcatgataaagtcttgtgggattcaatcaagactctt 248  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  849166 atcatgaaaaagtcttgtggtattcaatcaagactctt 849203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 14465497 - 14465452
Alignment:
Q  211 atcatgataaagtcttgtgggattcaatcaagactctttccaattt 256  Q
    ||||||| |||||||||||| ||||||| || ||||||||||||||    
T  14465497 atcatgaaaaagtcttgtggtattcaattaaaactctttccaattt 14465452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 39546082 - 39546123
Alignment:
Q  38 tttcatgcatgttattgtgatctattctatctatctatgaat 79  Q
    |||||||||| ||| ||||||||||||||| |||||||||||    
T  39546082 tttcatgcatattagtgtgatctattctatttatctatgaat 39546123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 16894174 - 16894138
Alignment:
Q  166 ggtgtatttgatcatgattctaagggattttaaaaga 202  Q
    |||||||| |||||| |||||||||||||||||||||    
T  16894174 ggtgtattggatcataattctaagggattttaaaaga 16894138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 100100 - 100232
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnn 263  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||| ||  |||||||||| || |||||||||||           
T  100100 ggggtgtattggatcatgattctaagggattttaaaaga-cttttttatcatgaaaaagtcttctgatattcaatcaacacactttccaatttaaaaaaa 100198  T
Q  264 gttttgtgttattcaatcaaaattctttggcatt 297  Q
    || ||||||||||||||||| |||||||| ||||    
T  100199 gtcttgtgttattcaatcaagattctttgtcatt 100232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 38837 - 38755
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctt 248  Q
    ||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||||||    
T  38837 gggtgtattggatcatgattctaagggattttaaaaga-tatttttatcatgaaaaagtcttgtggtattcaatcaagactctt 38755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 15305 - 15219
Alignment:
Q  211 atcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||       || ||||||||||||||||| |||||||| ||||    
T  15305 atcatgaaaaaatcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcatt 15219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 15948 - 15862
Alignment:
Q  211 atcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||       || ||||||||||||||||| |||||||| ||||    
T  15948 atcatgaaaaaatcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcatt 15862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 297
Target Start/End: Original strand, 8654 - 8783
Alignment:
Q  167 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngtt 266  Q
    ||||||| ||||||||||||||||||||||||||||        ||||||| ||||| |||||| |||||||||||||| ||| ||||||       ||     
T  8654 gtgtattggatcatgattctaagggattttaaaaga-tttttttatcatgaaaaagtattgtggtattcaatcaagacttttttcaatttaaaaaaagtc 8752  T
Q  267 ttgtgttattcaatcaaaattctttggcatt 297  Q
    |||||||||| |||||| |||||||| ||||    
T  8753 ttgtgttatttaatcaagattctttgtcatt 8783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 803 - 725
Alignment:
Q  219 aaagtcttgtgggattcaatcaagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttggcatt 297  Q
    |||||||||||| |||||||||||||||||| ||||||       || ||||||||||||||||| |||||||| ||||    
T  803 aaagtcttgtggtattcaatcaagactctttacaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcatt 725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 39171 - 39087
Alignment:
Q  164 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtgggattcaatcaagactcttt 249  Q
    |||||||||| |||||||||||||| |||||||||||||        ||||||| |||||||||||| |||||||||||| |||||    
T  39171 ggggtgtattggatcatgattctaatggattttaaaaga-cttttttatcatgaaaaagtcttgtggtattcaatcaagattcttt 39087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 102026 - 102063
Alignment:
Q  165 gggtgtatttgatcatgattctaagggattttaaaaga 202  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  102026 gggtgtattagatcatgattctaagggattttaaaaga 102063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University