View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5114_high_3 (Length: 242)
Name: NF5114_high_3
Description: NF5114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5114_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 31560812 - 31560599
Alignment:
| Q |
11 |
catcatcattgagacagctctttataactggatgcaagtctgtaagacagtgagcctcactgcctcagaaagcttttctctagaattttcagcaaggcaa |
110 |
Q |
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| T |
31560812 |
catcatcattgagacagctctttataactggatgcaagtctgtaagacagtgagcctcactgcctcagaaagcttttctctagaattttcagcaaggcaa |
31560713 |
T |
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| Q |
111 |
gttattgtctatgtaaagtatggaatcagaatagctgcggtaacttatctcgaatgtccgtctaaatcaacgattgagatcaattacaataaattgaatg |
210 |
Q |
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| T |
31560712 |
gttattgtctatgtaaagtatggaatcagaatagctgcggtaacttatctcgaatgtccgtctaaatcaacgattgagatcaattataataaattgaatg |
31560613 |
T |
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| Q |
211 |
aatgtgtaatctga |
224 |
Q |
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| T |
31560612 |
aatgtgtaatctga |
31560599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 31557870 - 31557781
Alignment:
| Q |
126 |
aagtatggaatcagaatagctgcggtaacttatctcgaatgtccgtctaaatcaacgattgagatcaattacaataaattgaatgaatgt |
215 |
Q |
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| T |
31557870 |
aagtatggaatcagaatagctgctgtaactgatctcgaatgtccgtctaaatcaatggttgagatcagttacaataaattaaatgaatgt |
31557781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 9838336 - 9838278
Alignment:
| Q |
11 |
catcatcattgagacagctctttataactggatgcaagtctgtaagacagtgagcctca |
69 |
Q |
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| T |
9838336 |
catcatcattgagacagctctttataactggatgcaagtgtgtaagacagtgagcctca |
9838278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 31558060 - 31558017
Alignment:
| Q |
59 |
agtgagcctcactgcctcagaaagcttttctctagaattttcag |
102 |
Q |
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| T |
31558060 |
agtgagcctcactgcctcagaaagcttttctctagaatattcag |
31558017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 9838108 - 9838001
Alignment:
| Q |
125 |
aaagtatggaatcagaatagctgcggtaa-----cttatctcgaatgtccg-tctaaatca--acgattgagatcaattacaataaattgaatgaatgtg |
216 |
Q |
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||||||||||||||||||||||||||||| || |||||||||| ||| ||||||||| | | | ||||||| | |||||||||| |||||||||| |
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| T |
9838108 |
aaagtatggaatcagaatagctgcggtaaggtaactgatctcgaatgcccgatctaaatcacaatggtcgagatcagtaacaataaattaaatgaatgtg |
9838009 |
T |
|
| Q |
217 |
taatctga |
224 |
Q |
| |
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|||||||| |
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| T |
9838008 |
taatctga |
9838001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 9838156 - 9838124
Alignment:
| Q |
104 |
aaggcaagttattgtctatgtaaagtatggaat |
136 |
Q |
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| T |
9838156 |
aaggcaagttactgtctatgtaaagtatggaat |
9838124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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