View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5114_low_4 (Length: 226)
Name: NF5114_low_4
Description: NF5114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5114_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 6132367 - 6132172
Alignment:
| Q |
19 |
aactcagctactcgcgccacattaacaatactttcgagcactgggcttgggatgcagtctaatttgagacactcttcattcataactatccaataatctt |
118 |
Q |
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| T |
6132367 |
aactcggctactcgcgccacattaacaatactttcgaccactgggcttgggatgcagtctaatttgagacactcttcattcataactatccaataatctt |
6132268 |
T |
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| Q |
119 |
caatctctttcagaatgagtttgtaagcttcctcttgtgacatatcatattgcttcatgcaacattcaactgcagaagcaacatgcactctctgct |
214 |
Q |
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| T |
6132267 |
cgatctctttcagaatgagtttgtaagcttcctcttgtgacatatcatattgcttcatgcaacattcaactgcagaagcaacatgcactctttgct |
6132172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 6135987 - 6135842
Alignment:
| Q |
50 |
tttcgagcactgggcttgggatgcagtctaatttgagacactcttcattcataactatccaataatcttcaatctctttcagaatgagtttgtaagcttc |
149 |
Q |
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| T |
6135987 |
tttcaagcactggtcttggtatgcaatctaacttgaggcactcttcattcataattatccaattatcgtcaatctctttcaaaatgagtctataagc--- |
6135891 |
T |
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| Q |
150 |
ctcttgtgacatatcatattgcttcatgcaacattcaactgcagaagcaac |
200 |
Q |
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| T |
6135890 |
--ctattcacatgtcatattgcttcatgcaacattcaactgtagaagcaac |
6135842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 34459673 - 34459850
Alignment:
| Q |
29 |
ctcgcgccacattaacaatactttcgagcactgggcttgggatgcagtctaatttgagacactcttcattcataactatccaataatcttcaatctcttt |
128 |
Q |
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| T |
34459673 |
ctcgcgcaaaattaagaatacattcaagcactggccttggaatgtggtgtaattttaggcactcttcattcataactctccataaatcttcaatctcctt |
34459772 |
T |
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| Q |
129 |
cagaatgagtttgtaagcttcctcttgtgacatatcatattgcttcatgcaacattcaactgcagaagcaacatgcac |
206 |
Q |
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| T |
34459773 |
gagaatgagtttataagcctcttcttgtgatatgtcatattgcttcatgcaacaatcaactgcagaggcaacatgcac |
34459850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 34448428 - 34448620
Alignment:
| Q |
17 |
caaactcagctactcgcgccacattaacaatactttcgagcactgggcttgggatgcagtctaatttgagacactcttcattcataactatccaataatc |
116 |
Q |
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| T |
34448428 |
caaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaacttgagacactcttcattcatgaccttccaataatt |
34448527 |
T |
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| Q |
117 |
ttcaatctctttcagaatgagtttgtaagcttcctcttgtgacatatcatattgcttcatgcaacattcaactgcagaagcaacatgcactct |
209 |
Q |
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| T |
34448528 |
ctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactct |
34448620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 34473717 - 34473889
Alignment:
| Q |
34 |
gccacattaacaatactttcgagcactgggcttgggatgcagtctaatttgagacactcttcattcataactatccaataatcttcaatctctttcagaa |
133 |
Q |
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| T |
34473717 |
gccacattaagaatacattcaagcacagggttggggatgtagtctaacttgaggaactcttcatttatatccatccaaaaatcttcaatgtccttgttaa |
34473816 |
T |
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| Q |
134 |
tgagtttgtaagcttcctcttgtgacatatcatattgcttcatgcaacattcaactgcagaagcaacatgcac |
206 |
Q |
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| T |
34473817 |
tgtgcttataggcctcttcttgtgacatgttgtattgcttcatgcaacattcaactgctgcagcaacatgcac |
34473889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 34483857 - 34483900
Alignment:
| Q |
82 |
ttgagacactcttcattcataactatccaataatcttcaatctc |
125 |
Q |
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| T |
34483857 |
ttgaggcactcttcattcataattatccaataatcttcaatctc |
34483900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 1593281 - 1593352
Alignment:
| Q |
133 |
atgagtttgtaagcttcctcttgtgacatatcatattgcttcatgcaacattcaactgcagaagcaacatgc |
204 |
Q |
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| T |
1593281 |
atgagtttatatgcatcttctggtgacatgttgtattgcttcatgcaacactcaactgctgaagcaacatgc |
1593352 |
T |
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