View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5115-Insertion-1 (Length: 754)
Name: NF5115-Insertion-1
Description: NF5115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5115-Insertion-1 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 677; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 8 - 754
Target Start/End: Complemental strand, 17821849 - 17821101
Alignment:
| Q |
8 |
caacttgcacttctggaacacaacagctgcatttccaaagatgaagtcaatggtacctgtaatgacagagtcacggtaaaactgccggttggagtgtgcg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17821849 |
caacttgcacttctggaacacaacagctgcatttccaaagatgaagtcaatggtacctgtaatgacagagtcacggtaaaactgccggttggagtgtgcg |
17821750 |
T |
|
| Q |
108 |
taaagagtgtcttgaaaggcgtcaatgcggcaacggttgatgacagattggtcagagccgacacggagagccactgcctggtgctttgctgcgcctgccg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17821749 |
taaagagtgtcttgaaaggcgtcaatgcggcaacggttgatgacagattggtcagagccgacacggagagccactgcctggtgctttgctgcgcctgcca |
17821650 |
T |
|
| Q |
208 |
tattttggaaccaaatatcttgtgctataaacccatccccaaccgcagctgcaaaaccagatttttatttggttagtgttgatatttgggtaggcattcc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17821649 |
tattttggaaccaaatatcttgtgctataaacccatccccaaccgcagctgcaaaaccagatttttatttggttagtgttgatatttgggtaggcattcc |
17821550 |
T |
|
| Q |
308 |
atacaattagagtatgaacttggtaaattaatttagatctaatacaaaagacaggagaagaatatgactt--agaaattgaagagagttcaagaaaagaa |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| |
|
|
| T |
17821549 |
atacaattagagtatgaacttggtaaattaatttagatctaatacaaaagacaggagaagaatattacttagagaaattgaagcgagttcaagaaaagaa |
17821450 |
T |
|
| Q |
406 |
gacaaaatttataagtatacatgaaaatgaaatggtaattacaaaaagtggaaggttcataccaacagttgaacttttgaaggtcgttgtcccatcgata |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17821449 |
gacaaaatttataagtatacatgaaaatgaaatggtaaatacaaaaagtggaaggttcataccaacagttgaacttttgaaggtcgttgtcccatcgata |
17821350 |
T |
|
| Q |
506 |
aaatttaagtttcctgtgattattgttgcatccattccatcaccaacgagcatcacgtttgnnnnnnncgaaccaatttctacgttctctttgtatgttc |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17821349 |
aaatttaagtttcctgtgattattgttgcatccattccatcaccaacgagcatcacatttgtttttttcgaaccaatttctacgttctctttgtatgttc |
17821250 |
T |
|
| Q |
606 |
cgtttttcacatagataacatactttgtcttacctttgtcaggtgcagatgccacagcctcagccacagtcttgaacttgccactcccatcctgagccac |
705 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17821249 |
cctttttcacatagataacatactttgtcttaccgttgtcaggtgcagatgccacagcctcagccacagtcttgaacttgccactcccatcctgagctac |
17821150 |
T |
|
| Q |
706 |
gacaacatttgcctctatatccccaaccgcggtctccaaaagcctccga |
754 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
17821149 |
gacaacatttgcctttatgtccccaaccgcggtctccaaaagcctccga |
17821101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 463 - 732
Target Start/End: Complemental strand, 17776925 - 17776656
Alignment:
| Q |
463 |
cataccaacagttgaacttttgaaggtcgttgtcccatcgataaaatttaagtttcctgtgattattgttgcatccattccatcaccaacgagcatcacg |
562 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||| |||||||| ||||||||| | ||||||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
17776925 |
cataccaacagttgcacttttgaaggtggttgttccatcgatgaaatttaagctgcctgtgattattgttgcatccataccatcacccacaagcatcaca |
17776826 |
T |
|
| Q |
563 |
tttgnnnnnnncgaaccaatttctacgttctctttgtatgttccgtttttcacatagataacatactttgtcttacctttgtcaggtgcagatgccacag |
662 |
Q |
| |
|
|||| | |||||||| | |||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||| ||||||||||| |||| |
|
|
| T |
17776825 |
tttgtctttttcttgccaatttcaatgttctctttgtatgttccctttttcacatatataacataccttgtcttaccgttgtctggtgcagatgctacag |
17776726 |
T |
|
| Q |
663 |
cctcagccacagtcttgaacttgccactcccatcctgagccacgacaacatttgcctctatatccccaac |
732 |
Q |
| |
|
| | ||||||||||||||||||||| || || ||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
17776725 |
cttgagccacagtcttgaacttgccgctgccgtcctgagccaccacaacattggcctttatatccccaac |
17776656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 17777248 - 17776994
Alignment:
| Q |
12 |
ttgcacttctggaacacaacagctgcatttccaaagatgaagtcaatggtacctgtaatgacagagtcacggtaaaactgccggttggagtgtgcgtaaa |
111 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||||||||| ||||||| |||||| |||||| |||||||||||||| || |||||||||||||| || | |
|
|
| T |
17777248 |
ttgctcttctggaaaacaacagctgcgtttccaaagataaagtcaacggtaccggtaatgtatgagtcacggtaaaattgtcggttggagtgtgcataga |
17777149 |
T |
|
| Q |
112 |
gagtgtcttgaaaggcgtcaatgcggcaacggttgatgacagattggtcagagccgacacggagagccactgcctggtgctttgctgcgcctgccgtatt |
211 |
Q |
| |
|
||||||||||||| || ||||| ||| ||||||||||| ||||| |||| ||||||||| ||||| |||||||||||||| || |||||| || || |
|
|
| T |
17777148 |
gagtgtcttgaaatgcatcaattttgcagcggttgatgacggattgatcagcgccgacacgaagagcaactgcctggtgcttctgtgggcctgctgtgtt |
17777049 |
T |
|
| Q |
212 |
ttggaaccaaatatcttgtgctataaacccatccccaaccgcagctgcaaaacca |
266 |
Q |
| |
|
|||||||| ||| || || |||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
17777048 |
ttggaacctaatgtcctgagctataaacccatctccaacagcagctacaaaacca |
17776994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 17807941 - 17807687
Alignment:
| Q |
12 |
ttgcacttctggaacacaacagctgcatttccaaagatgaagtcaatggtacctgtaatgacagagtcacggtaaaactgccggttggagtgtgcgtaaa |
111 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||| |||||||||||||| ||||||| |||||||||||||| || ||||||| ||||||||| | |
|
|
| T |
17807941 |
ttgcacttctgcaacacaacagctgcgtctccaaagataaagtcaatggtaccggtaatgaaggagtcacggtaaaattgtcggttggtgtgtgcgtata |
17807842 |
T |
|
| Q |
112 |
gagtgtcttgaaaggcgtcaatgcggcaacggttgatgacagattggtcagagccgacacggagagccactgcctggtgctttgctgcgcctgccgtatt |
211 |
Q |
| |
|
||||||||||||| || ||||| ||||||||| ||||||||| | ||||||||||| || ||||| |||||||| ||||| || |||||||| || |
|
|
| T |
17807841 |
gagtgtcttgaaatgcatcaattttgcaacggttaatgacagatcgatcagagccgacgcgcagagcaactgcctgatgcttctgtggacctgccgtgtt |
17807742 |
T |
|
| Q |
212 |
ttggaaccaaatatcttgtgctataaacccatccccaaccgcagctgcaaaacca |
266 |
Q |
| |
|
|||||| | ||| || || |||||||||| ||||||||| |||||| |||||||| |
|
|
| T |
17807741 |
ttggaatccaatgtcctgagctataaaccaatccccaacagcagctacaaaacca |
17807687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 462 - 719
Target Start/End: Complemental strand, 17807618 - 17807361
Alignment:
| Q |
462 |
tcataccaacagttgaacttttgaaggtcgttgtcccatcgataaaatttaagtttcctgtgattattgttgcatccattccatcaccaacgagcatcac |
561 |
Q |
| |
|
||||||||||||||| | ||| |||||| ||| ||||| | |||||||| | ||||||||||| ||||||||||| || ||||| | ||||||||| |
|
|
| T |
17807618 |
tcataccaacagttgcagtttggaaggtgcctgttccatcaacgtaatttaagctgcctgtgattatcgttgcatccataccgtcacccaagagcatcac |
17807519 |
T |
|
| Q |
562 |
gtttgnnnnnnncgaaccaatttctacgttctctttgtatgttccgtttttcacatagataacatactttgtcttacctttgtcaggtgcagatgccaca |
661 |
Q |
| |
|
||| | | | |||||||| ||||||||||| |||| |||||||| |||||||||||| ||| | ||||||||| |||||||||||| ||| |
|
|
| T |
17807518 |
gttcgtctttgaactagcgatttctacattctctttgtagattccctttttcacgtagataacataccttgccgtacctttgttaggtgcagatgcaaca |
17807419 |
T |
|
| Q |
662 |
gcctcagccacagtcttgaacttgccactcccatcctgagccacgacaacatttgcct |
719 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || | |||||| |||||||| |||| |
|
|
| T |
17807418 |
gcctcagcaacagtcttgaacttgccactcccgtctttagccaccacaacattggcct |
17807361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University