View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5115-Insertion-2 (Length: 732)
Name: NF5115-Insertion-2
Description: NF5115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5115-Insertion-2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 371 - 732
Target Start/End: Complemental strand, 39752752 - 39752391
Alignment:
| Q |
371 |
tttatttactcacagtaagggcaacaacagcaacaattagtccaattttggcaacatctacaacatggggacttttaaagtctaactgatttatggaact |
470 |
Q |
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| T |
39752752 |
tttatttactcacagtaagggcaacaacagcaacaattagtccaattttggcaacatctacaacatggggactgttaaagtctaactgatttatggaact |
39752653 |
T |
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| Q |
471 |
tggattgagtccccctttaacatgtttcacaatcttaactccatttttatcggctcgtgttagaaaaacaactagagttgacagtataactgatacaagt |
570 |
Q |
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| T |
39752652 |
tggattgagtccccctttaacatgtttcacaatcttaactccatttttatcggctcttgttagaaaaacaactagagttgacagtataactgatacaagt |
39752553 |
T |
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| Q |
571 |
ggtgcaattgatgccaaccagaacaacttcttcttccttttaccctgcaataatgtaataatattaagcatcaatttgagggaaattctgtccnnnnnnn |
670 |
Q |
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| T |
39752552 |
ggtgcaattgatgccaaccagaacaacttcttcttccttttaccctgc---aatgtaataatattaagcatcaatttgagggaaattctgtccaaaaaaa |
39752456 |
T |
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| Q |
671 |
taattcctagcta---ataaaggtggttcaacaatgacactcaccacatatctagtcgttaggat |
732 |
Q |
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| T |
39752455 |
taattcctagctaattataaaggtggttcagcaatcacactcaccacaaatctagtcgttaggat |
39752391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 39753131 - 39752808
Alignment:
| Q |
8 |
aattcatagtaaaagttcgatcttattataatctcaaagacgaaattcaannnnnnn-gaaaacatttgtaaaatgactatcagtatcattataataaat |
106 |
Q |
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| T |
39753131 |
aattcatagtaaaagttcgatcttattataatctcaaagacgaaattcgattttttttgaaaacatttgtaaaatgactatcagtatcattataataaat |
39753032 |
T |
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| Q |
107 |
gataattattctttccctaattttttaaaataaaaatagt------------------accagtagcaacatagcaggaggtgagagatcctatgatgtt |
188 |
Q |
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| T |
39753031 |
gataattattctttccctaatttttaaaaaaaaaaatagttgacggttaaaaaatagtaccagttgcaacatagcaggaggtgagagatcctatgatgtt |
39752932 |
T |
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| Q |
189 |
tgtgaagcctattgacatcatctctttgtttccatcaagttggtatcctttgatcgatgcaaaagatcgtccaacagcaacagattcctataacaatggt |
288 |
Q |
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| T |
39752931 |
tgtgaagcctattgacatcatctctttgtttccatcaagttggtatcctttgatcgatgcaaaagatcgtccaacagcaacagattcctataacaatggt |
39752832 |
T |
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| Q |
289 |
ggaaattagcatgaaaggaacggc |
312 |
Q |
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| T |
39752831 |
ggaaattagcatgaaaggaacggc |
39752808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 25705944 - 25706011
Alignment:
| Q |
199 |
attgacatcatctctttgtttccatcaagttggtatcctttgatcgatgcaaaagatcgtccaacagc |
266 |
Q |
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| T |
25705944 |
attgacaacatttctctgttcccatcaagttggtatcctttgatggaagcgaaagatcggccaacagc |
25706011 |
T |
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