View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5115-Insertion-4 (Length: 592)
Name: NF5115-Insertion-4
Description: NF5115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5115-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 8 - 492
Target Start/End: Original strand, 39853631 - 39854115
Alignment:
| Q |
8 |
attagtacatgtaaatgtaacgtaatgatcgaaccatcaaaagtatgtatagtattctctttcattttgttcttannnnnnn-aattataataaattcct |
106 |
Q |
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| T |
39853631 |
attagtacatgtaaatgtaacgtaatgatcgaaccatcaaaagtgtgtatagtattctctttcattttgttcttattttatttaattataataaattcct |
39853730 |
T |
|
| Q |
107 |
tcccccacgctgtcccctgttcgccgaaaacatacgctttgaacacttgggactgaattgtaagaattttgagacctcaataaccattctaagtgccaac |
206 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39853731 |
tcccccacgctgtcccctgtttgccgaaaacatacgctttgaacacttgggactgaattgtaagaattttgagacctcaataaccattctaagtgccaac |
39853830 |
T |
|
| Q |
207 |
ccactttggattgcaactgagnnnnnnntataataaaatatgacaatggaagtttgcttgtcgtatcatttcctttaataattgttaaaaccaatacata |
306 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39853831 |
ccactttggattgcaactgagaaaaaa-tataataaaatatgacaatggaagtttgcttgtcgtatcatttcctttaataattattaaaaccaatacata |
39853929 |
T |
|
| Q |
307 |
gagggaatatgaaaaggaaaatcactaatgtgtcgaccaaccatttcctaatgcacccactactatcattgtagctttatacatatatcattgacaccaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39853930 |
gagggaatatgaaaaggaaaatcactaatgtgtcgaccaaccatttcctaatgcacccactactatcattgtagctttatacatatatcattgacaccaa |
39854029 |
T |
|
| Q |
407 |
gacctaactaattaaacttatcctgaatttttaaattatttaatgcgtctttttatcttaagtaagtacacaatccaatctaatcc |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39854030 |
gacctaactaattaaacttatcctgaatttttaaattatttaatgcgtctttttatcttaagtaagtacacaatccaatctaatcc |
39854115 |
T |
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