View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5115-Insertion-5 (Length: 454)
Name: NF5115-Insertion-5
Description: NF5115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5115-Insertion-5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 167 - 454
Target Start/End: Complemental strand, 6236914 - 6236627
Alignment:
| Q |
167 |
atttttggtcgttcgattttgtgttgttgtactgccaacttagttgagatgataatcactttctttaattcagaacacaagtttatatgtttnnnnnnnn |
266 |
Q |
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| T |
6236914 |
atttttggtcgttcggttttgtgttgttgtactgccaacttagttgagatgataatcactttctttaattcagaacacaagtttatatgtttaaaaaaaa |
6236815 |
T |
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| Q |
267 |
tatctaaattcatcaaacattttaatttttgattagattttcacctatctaaatatctaaagtctcagttgtgtttgctctcacatacaccgggaaggga |
366 |
Q |
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| T |
6236814 |
tatctaaattcatcaaacattttaatttttgattagattttcacctatctaaatatctaaagtctcacttgtgtttgctctcacatacaccgggaaggga |
6236715 |
T |
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| Q |
367 |
atgcagctgctgacgctatggtgaaaaatacgaagagtttacctaccttctcttctcaatggaggatctcaccacccagctttattgc |
454 |
Q |
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| T |
6236714 |
atgcagctgctgacgctatggcgaaaaatacgaagagtttacctaccttctcttctcaatggaggatctcaccaccctgctttattgc |
6236627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 6237073 - 6236982
Alignment:
| Q |
8 |
tcacgatctagaaagtaccgggacaatgaaaaaacactaccaatcacctcacaatcccaacaattacccccactagatatttgcactattgc |
99 |
Q |
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| T |
6237073 |
tcacgatctagaaagtatcgggacaatgaaaaaacactaccaatcacctcacaatcccaacaattacccccactagatatttggactattgc |
6236982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 33891529 - 33891595
Alignment:
| Q |
12 |
gatctagaaagtaccgggacaatgaaaaaacactaccaatcacctcacaatcccaacaattaccccc |
78 |
Q |
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| T |
33891529 |
gatctagaaagtattagggcaatgagaaaacactaccaaccacctcacaatcccaacaattaccccc |
33891595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 33952719 - 33952653
Alignment:
| Q |
12 |
gatctagaaagtaccgggacaatgaaaaaacactaccaatcacctcacaatcccaacaattaccccc |
78 |
Q |
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| T |
33952719 |
gatctagaaagtattagggcaatgagaaaacactaccaaccacctcacaatcccaacaattaccccc |
33952653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 311
Target Start/End: Original strand, 33891693 - 33891819
Alignment:
| Q |
189 |
gttgttgtactgccaacttagttgagatgataatcactttctttaattcagaacacaagtttatatgtttnnnnnnnnt-atctaaattcatcaaacatt |
287 |
Q |
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| T |
33891693 |
gttgttgtgttgccaatttaattgagatgacaatcactttctttgtttcagaacacaaatttatatattaaaaaataataatctaaattcatcaaacatt |
33891792 |
T |
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| Q |
288 |
ttaattt---ttgattagattttcacc |
311 |
Q |
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| T |
33891793 |
ttaatttcaatcgattagattttcacc |
33891819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 311
Target Start/End: Complemental strand, 33952555 - 33952429
Alignment:
| Q |
189 |
gttgttgtactgccaacttagttgagatgataatcactttctttaattcagaacacaagtttatatgtttnnnnnnnnt-atctaaattcatcaaacatt |
287 |
Q |
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|||||||| |||||| ||| ||||||||| ||||||||||||| |||||||||||| ||||||| || | |||||||||||||||||||| |
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| T |
33952555 |
gttgttgtgttgccaatttaattgagatgacaatcactttctttgtttcagaacacaaatttatatattaaaaaataataatctaaattcatcaaacatt |
33952456 |
T |
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| Q |
288 |
ttaattt---ttgattagattttcacc |
311 |
Q |
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| T |
33952455 |
ttaatttcaatcgattagattttcacc |
33952429 |
T |
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