View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5115-Insertion-6 (Length: 446)
Name: NF5115-Insertion-6
Description: NF5115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5115-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 5 - 366
Target Start/End: Original strand, 251166 - 251532
Alignment:
| Q |
5 |
acaaagtggtgaaattcattactaaatgtaaatccacaaaaatataatatatttggtatgaagaaagcaggcctaaatttgaaggcgtaaggttctgcaa |
104 |
Q |
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| T |
251166 |
acaaagtggtgaaattcattactaaatgtaaatccacaaaaatataatatatttggtatgaagaaagcaggcctaaatttgaaggcgtaaggttctgcaa |
251265 |
T |
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| Q |
105 |
aacgtattgatcgatatccaatatcatgatctttgtctttacagtgaactccgagctgttcaccagtggtgaagttgtttgtgatatacatgtgtactat |
204 |
Q |
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| T |
251266 |
aacgtattgatcgatatccaatatcatgatctttgtctttacagtgaactccgagctgttcaccagtggtgaagttgtttgtgatatacatgtgtactat |
251365 |
T |
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| Q |
205 |
gggcttaaggataccgaaactattaccacccttcaactggaaaacaacaagaatagttagtaaagcaaatttcgagagtgaaaccatcctatttgcacag |
304 |
Q |
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| T |
251366 |
gggcttaaggataccgaaactattaccacccttcaactggaaaacaacaagaatagttagtaaagcaaatttcgagagtgaaaccatcctatttgcacaa |
251465 |
T |
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| Q |
305 |
atcgatattcaaacatatgacat-----gtttcaagttatatatatactgttgaacctaatcaaggg |
366 |
Q |
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| T |
251466 |
atcgatattcaaacatatgacatgtttcgtttcaagttatatatatactgttgaacctaatgaaggg |
251532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 33 - 260
Target Start/End: Original strand, 255536 - 255763
Alignment:
| Q |
33 |
taaatccacaaaaatataatatatttggtatgaagaaagcaggcctaaatttgaaggcgtaaggttctgcaaaacgtattgatcgatatccaatatcatg |
132 |
Q |
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| T |
255536 |
taaatccacaaaaatataaggtatttgatatgaagaaagcaggcctaaaagtgaaagcgtaaggttcttgaaaatgtattgctcgatatccaatatcatg |
255635 |
T |
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| Q |
133 |
atctttgtctttacagtgaactccgagctgttcaccagtggtgaagttgtttgtgatatacatgtgtactatgggcttaaggataccgaaactattacca |
232 |
Q |
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| T |
255636 |
atctttgtctttacagtggactccgagttgttcaccattggtcaagttgttggtaatatacatgtgtactacgggcttaaggatactgaaactattacca |
255735 |
T |
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| Q |
233 |
cccttcaactggaaaacaacaagaatag |
260 |
Q |
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| T |
255736 |
cccttcaactgaaaaacaaaaataatag |
255763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 396 - 446
Target Start/End: Original strand, 251561 - 251611
Alignment:
| Q |
396 |
aatgcaaattaaaagtgatgctattttaatgtgatgtcataagttgacatt |
446 |
Q |
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| T |
251561 |
aatgcaaattaaaagtgatgctattttaatgtgatgtcatacgttgacatt |
251611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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