View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5115_high_1 (Length: 448)
Name: NF5115_high_1
Description: NF5115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5115_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 23 - 433
Target Start/End: Original strand, 46456353 - 46456765
Alignment:
| Q |
23 |
actgcatcacctcctcctcctgttaatgcaccacctccagaagatgatatcattttaccccctcactttggctcttcatatgcttcacctcctccaccaa |
122 |
Q |
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| T |
46456353 |
actgcatcacctcctcctcctgttaatgcaccacctccagaagatgatatcattttaccccctcactttggctcttcatatgcttcacctcctccaccaa |
46456452 |
T |
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| Q |
123 |
tcattgctggttactaaatttaaacaaggccgataacttacttccacctttattagatcatagtctcaaagttgaggcatgatgacgcgacaagatcttt |
222 |
Q |
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| T |
46456453 |
tcattgctggttactaaatttaaacaaggcccataacttacttccacctttattagatcatagtctcaaagttgaggcatgatgacgcgacaagatcttt |
46456552 |
T |
|
| Q |
223 |
atttgtatgctgaaatattttgaattggcttcaataattgaaagagcaaaatgaagatgtattcataaacaatgttttaaaattatgatttaccaattct |
322 |
Q |
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| T |
46456553 |
atttatattctgaaatattttgaattggcttcaataattgaaagagcaaaatgaagatgtattcataaacaatgttttaaaattatgatttaccaattct |
46456652 |
T |
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| Q |
323 |
tttttgttgttgttgttgtattacagtatagtgtaagaattgataatatcaacc--atatataatatattgtacggattcacacatgacattatacatag |
420 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46456653 |
tttttgttgttgttgttgtattacattatagtgtaagaattgataatatcaaccatatatataatatattgtacggattcacacatgacattatacatag |
46456752 |
T |
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| Q |
421 |
agatagaggtttc |
433 |
Q |
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| T |
46456753 |
agatagaggtttc |
46456765 |
T |
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