View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5115_high_3 (Length: 293)
Name: NF5115_high_3
Description: NF5115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5115_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 32956143 - 32956428
Alignment:
| Q |
1 |
caaaaaattattattaatagcatgacattgtctcatatctaacaaagtcaaactcttac-----agctgagacctagtaagctataaatgatttttgccg |
95 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |
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| T |
32956143 |
caaaaaattattattaatagcatgacattgtctcctatctaacaaagtcaaactcttactcctgagctcagacctagtaagttataaatgatttttgccg |
32956242 |
T |
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| Q |
96 |
aacatttatagtctactacgaggtcttggctcatatattttgaacatagacacaaaggtggtattggtaatgtatttttaccttagggccacgaggacca |
195 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32956243 |
aacatttatagtctactacgaggtctcggctcatatattttgaacatagacacaaagatggtattggtaatgtatttttaccttagggccacgaggacca |
32956342 |
T |
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| Q |
196 |
ttcctccaaaggggtgtagaagtggagtcacagctagcacatcgacgagcaagaagagaatcattgttagagttactaccaatatt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32956343 |
ttcctccaaaggggtgtagaagtggagtcacagctagcacaacgacgagcaagaagagaatcattgttagagttactaccaatatt |
32956428 |
T |
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Back To:
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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 7723610 - 7723517
Alignment:
| Q |
170 |
tttttaccttagggccacgaggaccattcctccaaaggggtgtagaagtggagtcacagctagcacatcgacgagcaagaagagaatcattgtt |
263 |
Q |
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|||||||||| ||||| ||||| || ||||||||||| ||||| || |||| ||||||| | ||||||| |||||||||||||||||||||||| |
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| T |
7723610 |
tttttacctttgggcctcgagggccgttcctccaaagcggtgtggaggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgtt |
7723517 |
T |
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