View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5115_high_5 (Length: 285)
Name: NF5115_high_5
Description: NF5115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5115_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 54227390 - 54227645
Alignment:
| Q |
13 |
aatatccaattaagcgaagtaaattgcggtgcactgccaagctaatcatctccaattctgtttggaactgtaactcgcccgcactaccatttacatcttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54227390 |
aatatccaattaagcgaagtaaattgcggtgcactgccaagctaatcatctccaattctgtttggaactgtaactcgcccgcactaccatttacatcttt |
54227489 |
T |
|
| Q |
113 |
caaccttttcaccgccaccaacgtgccatctccaagcttccccctataaacattgccaaaacctccagcaccaagtatattcttggagctgaaactatct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54227490 |
caaccttttcaccgccaccaacgtgccatctccaagcttccccctataaacattgccaaaacctccagcaccaagtatattcttggagctgaaactatct |
54227589 |
T |
|
| Q |
213 |
gttgcgtgttggagctctctgaaaccgaaatgtttgagatttcctaggctaacaac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54227590 |
gttgcgtgttggagctctctgaaaccgaaatgtttgagatttcctaggctaacaac |
54227645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University