View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5115_high_7 (Length: 267)
Name: NF5115_high_7
Description: NF5115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5115_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 254
Target Start/End: Complemental strand, 32634180 - 32633929
Alignment:
| Q |
5 |
ttatttcaaatagtagcagattgttcaaggaaaatatgattca--taatgtataacaatcatgccacattgtgagttacaataaatacctgatacattct |
102 |
Q |
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| T |
32634180 |
ttatttcaaatagtagtagattgttcaaggaaaatataattcacataatgtataacaatcatgtcacattgtgagttacaataaatacctgatacattct |
32634081 |
T |
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| Q |
103 |
gctcatattttctttgggaaggtactgtttatgcaaagcatgctttgtttgattaaagtattctgttacgccattaacaaattcttccttggttataatt |
202 |
Q |
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| T |
32634080 |
gctcatattttctttgggaatgtactgtttatgcaaagcatgctttgtttggttaaagtattctgttacgccattaacaaattcttccttggttataatt |
32633981 |
T |
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| Q |
203 |
tggtcaccatctttgtcaaaaacttttaacatgtctgttatttgttcatctc |
254 |
Q |
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| T |
32633980 |
tggtcaccatctttgtcaaaaacttttaacatgtctgttatttgttcatctc |
32633929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 88 - 246
Target Start/End: Complemental strand, 32615768 - 32615610
Alignment:
| Q |
88 |
tacctgatacattctgctcatattttctttgggaaggtactgtttatgcaaagcatgctttgtttgattaaagtattctgttacgccattaacaaattct |
187 |
Q |
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||||||||||||| || ||||| ||| || || ||||||| | ||| |||||||||||||||||| |||| |||||||||| |||| ||||||||||| |
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| T |
32615768 |
tacctgatacattttgttcatagattccttagggaggtactttctatccaaagcatgctttgtttggttaatatattctgttaagccactaacaaattct |
32615669 |
T |
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| Q |
188 |
tccttggttataatttggtcaccatctttgtcaaaaacttttaacatgtctgttatttg |
246 |
Q |
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| T |
32615668 |
tctttggttataatttggtcgccatttttgtcaaaagcttttaacatgtctgctatttg |
32615610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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