View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5115_high_8 (Length: 247)
Name: NF5115_high_8
Description: NF5115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5115_high_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 39753644 - 39753440
Alignment:
| Q |
37 |
attttgttagttagtaaatatagtaatcaaataagaaccttcttaatttatttatgttgccaataagaagaggtctaaagaggacaccgtaatggattca |
136 |
Q |
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| T |
39753644 |
attttgttagttagtaaatatagtaatcaaataagaaccttcttaatttatttatgttgcca-------gaggtctaaagaggacaccgtaatggattca |
39753552 |
T |
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| Q |
137 |
gttcaattatttaatgctaatggagttttannnnnnn-attctacttaggtttaaatttaataggtatattttcttgtgctttctttgatggatcttgtc |
235 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39753551 |
gttcaattatttaatgctaatggagttttattttttttattctacttaggtttaaatttaataggtatattttcttgtgctttctttgatggaacttgtc |
39753452 |
T |
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| Q |
236 |
ttgcgctttcta |
247 |
Q |
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| T |
39753451 |
ttgtgctttcta |
39753440 |
T |
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