View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5115_low_6 (Length: 284)
Name: NF5115_low_6
Description: NF5115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5115_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 53608960 - 53609154
Alignment:
| Q |
11 |
cacagaagaattaggataaaataaatctatgaaatagatgatataatggtttctatggtggaggtagattttgtggtctgtattgtcgagtttgattgaa |
110 |
Q |
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| T |
53608960 |
cacagaagaattaggataaaataaatctatgaaatagatgatataatggtttctatggtggaggtagattttgtggtctgtattgtcgagtttgattgaa |
53609059 |
T |
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| Q |
111 |
aatggt---atcagtgtcaaaaccactacctatagtgcttgtgcttgttaaggaaattaaggcagcaactagtcctgcattcccagctaaggttg |
202 |
Q |
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| T |
53609060 |
aatggtatgatcagtgtcaaaaccactacctatagtgcttgtgcttgttaaggaaattaaggcagcaactagtcctgcattcccagctaaggttg |
53609154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 53610356 - 53610415
Alignment:
| Q |
209 |
tgagttataatataaggttcaatgtaa-ggttatccactactgtagggtgcccttttact |
267 |
Q |
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| T |
53610356 |
tgagttattatattaggttcaatgtaaaggttgtccactactgtagggtgcccttttact |
53610415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 37210446 - 37210502
Alignment:
| Q |
146 |
ttgtgcttgttaaggaaattaaggcagcaactagtcctgcattcccagctaaggttg |
202 |
Q |
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| T |
37210446 |
ttgtgcttgttaaggaaattaaggcagctactagtcctgcatttccagctaaagttg |
37210502 |
T |
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