View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5115_low_9 (Length: 245)
Name: NF5115_low_9
Description: NF5115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5115_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 32956085 - 32955856
Alignment:
| Q |
1 |
tgaattgaaattgcagtcactatgcaatgcttgtgggattagatacaagaaggaagagagaagagcaaacgccgcggttgccacgacagccgcgactaac |
100 |
Q |
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| T |
32956085 |
tgaattgaaattgcagtcactatgcaatgcttgtgggattagatacaagaaggaagagagaagagcgaacgccgcggttgccacgacagctgcgactaac |
32955986 |
T |
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| Q |
101 |
ggcggcataatggagtcaggaaacttctacagtaacaacaaca---acaattcatggtactcacaaccacagagtcaaatgtatggcaatgagctacgtt |
197 |
Q |
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| T |
32955985 |
ggtggcataatggagtcaggaaacttctacagtaacaacaacaacaacaattcatggtactcacaaccacagagtcaaatgtatggcaatgagctacgtt |
32955886 |
T |
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| Q |
198 |
tcatggatgattcagatgcagaatcagaaa |
227 |
Q |
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| T |
32955885 |
tcatggatgattcagatgcagaatcagaaa |
32955856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 7723680 - 7723739
Alignment:
| Q |
9 |
aattgcagtcactatgcaatgcttgtgggattagatacaagaaggaagagagaagagcaa |
68 |
Q |
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|||| |||||| |||||||||| |||||||| |||| ||||||||||||||||||||||| |
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| T |
7723680 |
aattacagtcattatgcaatgcatgtgggatcagattcaagaaggaagagagaagagcaa |
7723739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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