View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5116-Insertion-2 (Length: 915)
Name: NF5116-Insertion-2
Description: NF5116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5116-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 882; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 882; E-Value: 0
Query Start/End: Original strand, 7 - 915
Target Start/End: Complemental strand, 30275446 - 30274540
Alignment:
| Q |
7 |
aatttagttattagcggactcaaaaatctctttaatgagtatattatcatacttgaaagagcccttacttatgaaacaagtgcaacggagcaagatagtt |
106 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275446 |
aatttagttattagcggactcaagaatctctttaatgagtatattatcatacttgaaagagcccttacttatgaaacaagtgcaacggagcaagatagtt |
30275347 |
T |
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| Q |
107 |
ctagaatcaagttacctgagtcacttagacaacaggtttctattttggccaatttgtcaacattggtgcagtttctctctaccatggtcaaagatatctt |
206 |
Q |
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| T |
30275346 |
ctagaatcaagttacctgagtcacttacacaacaggtttctattttggccaatttgtcaacattggtgcagtttctctctaccatggtcaaagatatctt |
30275247 |
T |
|
| Q |
207 |
cagcatggattcacaattggtggagaaccactcagttggttttaagcatcatgaactcgatgtttttctgatgtttattgaagagggcttcaataagttg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275246 |
cagcatggattcacaattggtggagaaccactcagttggttttaagcatcatgaactcgatgtttttctgatgtttattgaagagggcttcaataagttg |
30275147 |
T |
|
| Q |
307 |
agaaatgtgttctgccagcaattaattctcagagctttgtctacttgtagtagccatgaaatagcttcagctattcactataacgaccaatttgatgcaa |
406 |
Q |
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| T |
30275146 |
agaaatgtgttctgccagcaattaattctcagagctttgtctacttgtagcagccatgaaatagcttcagctattcactataacgaccaatttgatgcaa |
30275047 |
T |
|
| Q |
407 |
acatgatccacaatccaatgccttctgccatttttcaggtatgttttcactgataattccctaacaaatagtttcttctgattttgcatctatatatgct |
506 |
Q |
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| T |
30275046 |
acatgatccacaatccaatgccttctgccatttttcaggtatgttttcactgataattccctaacaaatagttgcttctgattttgcatctatatatgct |
30274947 |
T |
|
| Q |
507 |
tatgtaagcttttatatttagtataaagtctagtctctgtcatgtgtaggttttatttttagagctgaggaaaattgaaaaacttgaagaagaaaatgtg |
606 |
Q |
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| T |
30274946 |
tatgtaagcttttatatttagtataaagtctagtctctgtcatgtgtaggttttatttttagagctgaggaaaattgaaaaacttgaagaagaaaatgtg |
30274847 |
T |
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| Q |
607 |
ttcgaagtgaattggttaatggaattactgagagaggtgatggtgtgtatgtttatttgggtttccaagagcaagaagataaatgcaacaacagaagagc |
706 |
Q |
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| T |
30274846 |
ttcgaagtgaattggttaatggaattactgagagaggtgatggtgtgtatgtttatttgggtttccaagagcaagaagataaatgcaacaacagaagagc |
30274747 |
T |
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| Q |
707 |
atgttagcttacaaactgatgaagccaaacaggttttccacttccctcccttctgtttattattgagtttcactatgagagagttttgaaaacaacatgc |
806 |
Q |
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| T |
30274746 |
atgttagcttacaaactgatgaagccaaacaggttttccacttccctcccttctgtttattattgagtttcactatg--agagttttgaaaacaacatgc |
30274649 |
T |
|
| Q |
807 |
ttctcaatttctcatccattatctttattccttgaacagtttattatggatgtgcaattcctagtggaaattggaatgtatggaggatatttctccactg |
906 |
Q |
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| T |
30274648 |
ttctcaatttctcatccattatctttattccttgaacagtttattatggatgtgcaattcctagtggaaattggaatgtatggaggatatttctccactg |
30274549 |
T |
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| Q |
907 |
atcctttac |
915 |
Q |
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| T |
30274548 |
atcctttac |
30274540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 610 - 767
Target Start/End: Original strand, 46270434 - 46270591
Alignment:
| Q |
610 |
gaagtgaattggttaatggaattactgagagaggtgatggtgtgtatgtttatttgggtttccaagagcaagaagataaatgcaacaacagaagagcatg |
709 |
Q |
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|||||||||||||| | | |||||| ||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||| |||||||||||||| |
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| T |
46270434 |
gaagtgaattggttgaaaggattactaagagaggtgatggtgtgtaagtttatttgggtttccaagaacaaagagatcaatgcaataacagaagagcatg |
46270533 |
T |
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| Q |
710 |
ttagcttacaaactgatgaagccaaacaggttttccacttccctcccttctgtttatt |
767 |
Q |
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| T |
46270534 |
tgagcttacaaactgatgaggccaaacaggtttttgatttccctaccttgtgtttatt |
46270591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 482 - 576
Target Start/End: Original strand, 46270328 - 46270422
Alignment:
| Q |
482 |
ttctgattttgcatctatatatgcttatgtaagcttttatatttagtataaagtctagtctctgtcatgtgtaggttttatttttagagctgagg |
576 |
Q |
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| T |
46270328 |
ttctgattttgcatccaagtatgcttatgcaagatttggtatttagtatgaagtttagtctatgccatgtgcaggctttatttctagaactgagg |
46270422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 7778760 - 7778693
Alignment:
| Q |
7 |
aatttagttattagcggactcaaa-aatctctttaat---gagtatattatcatacttgaaagagccc |
70 |
Q |
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|||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
7778760 |
aatttagtcattagtggactcaaggaatctctttaataatgagtatattatcatacttgaaagagccc |
7778693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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