View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5116-Insertion-3 (Length: 628)
Name: NF5116-Insertion-3
Description: NF5116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5116-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 8 - 342
Target Start/End: Original strand, 7683527 - 7683862
Alignment:
| Q |
8 |
atattgagaaacattaaattttccattgtcatgaagtttatgacacaattataacctaatatatttatagtaactgaagaagtagtttctgtgcatgtca |
107 |
Q |
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| T |
7683527 |
atattgagaaacattaaattttccattgtcatgaagtttatgacacaattataacctaatatatttatagtaactggagaagtagtttctgtgcatgtca |
7683626 |
T |
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| Q |
108 |
cgcacatgcttttattttatgacaacagtacacgattgtaaatcgatacagtctcttttgaaatgcaatatctcgttaaacagcagtcaacttcatagcc |
207 |
Q |
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| T |
7683627 |
cgcacatgcttttattttatgacaacagtacacgattgtaaatcgatacagtctcttttgaaatgcaatatctcgttaaacagcagtcaacttcatagcc |
7683726 |
T |
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| Q |
208 |
tctgaacaaaaactttgttgtacttccatagctagctcctccaaacttagctgacatcccagctctatctgtagtaacaaattatgg-nnnnnnnttagg |
306 |
Q |
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| T |
7683727 |
tctgaagaaaagctttgttgtacttccatagctagctcctccaaacttagctgacatcccagctctatctgtagtaacaaattatggaaaaaaaattagg |
7683826 |
T |
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| Q |
307 |
ggttgttcattgatgagaagtaagtaagaaccatgc |
342 |
Q |
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| T |
7683827 |
ggttgttcattgatgaaaagtaagcaagaaccatgc |
7683862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 391 - 628
Target Start/End: Original strand, 7683916 - 7684138
Alignment:
| Q |
391 |
tataatggccactatatttgatcattgctaatattatatccagtatagttagataaacatgcatggtagtagtagtatactattaatactattaattaat |
490 |
Q |
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| T |
7683916 |
tataatggccactatatttgatcattgctaatattatatccagtatagttagataaacatgcatggtagtggta------------tactattaatta-- |
7684001 |
T |
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| Q |
491 |
tataggaatgtagtattattcagta-ttgttcatttattatatgcatgacacgtaatctcagaagaatgcatgttgaagctttacgtgtggattcacggg |
589 |
Q |
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| T |
7684002 |
--taggaatgtagtattatttagtacttgttcatttattatatgcatgacacgtaatctcagaagaatgcatgttgaagctttacgtgtggattcacggg |
7684099 |
T |
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| Q |
590 |
gaaggaaaccgaaatcgtacatgattactttatataact |
628 |
Q |
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| T |
7684100 |
gaaggaaaccgaaatcgtacatgattactttatataact |
7684138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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