View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5116-Insertion-4 (Length: 596)
Name: NF5116-Insertion-4
Description: NF5116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5116-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 322 - 590
Target Start/End: Complemental strand, 16627884 - 16627616
Alignment:
| Q |
322 |
atgtagtaaaagtaacaatatacataaattttaaacaaaacgaggataataaaaaattcagttagtggaattcacaattcagctcagcttattttgttgc |
421 |
Q |
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| T |
16627884 |
atgtagtaaaagtaacaatatacataaattttaaacaaaacgaggataataaaaaattcagttagtggaattcacaattcagctcagcttattttgttgc |
16627785 |
T |
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| Q |
422 |
acataaaatcttgtcatagatccattttctgatgtgacatcatcgtctttgttttatgcatattaatttttgtcatgcaacttcctttgtctctttcaca |
521 |
Q |
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| T |
16627784 |
acataaaatcttgtcatagatccattttctgatgtgacatcatcgtctttgttttatgcatattaatttttgtcatgcaacttcctttgtctctttcaca |
16627685 |
T |
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| Q |
522 |
tttatttcttttgttattttcaccaaaatataataaatacgcaaaaatagaatgatatgatagaagtct |
590 |
Q |
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| T |
16627684 |
tttatttcttttattattttcacctaaatataataaatacgcaaaaatagaatgatatgacagaagtct |
16627616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 95 - 278
Target Start/End: Complemental strand, 16628086 - 16627906
Alignment:
| Q |
95 |
atgtaatttattcaagtgtttacgatcttttattaaaagatataatattaaggttcggtatatgtatctttatatcaatgccattattgccatttgctat |
194 |
Q |
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| T |
16628086 |
atgtaatttattcaagtgtttactctcttttattaaaagatataatattaaggttcggtat--gtatctttatatcaatgccattattgtcatttgctat |
16627989 |
T |
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| Q |
195 |
gtcgtccacgtaccatgtgtgataaatggacacagtactggagttagattggaccacatgaacataataatttcatgcagctaa |
278 |
Q |
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| T |
16627988 |
gtcgtccacgtaccatgtgtgataaatggacacagtactgcagttagattggaccacatgaaca-aataatttcatgtagctaa |
16627906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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