View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5116-Insertion-5 (Length: 470)
Name: NF5116-Insertion-5
Description: NF5116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5116-Insertion-5 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold2028 (1 HSPs) |
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| [»] scaffold0571 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 268 - 470
Target Start/End: Complemental strand, 12830334 - 12830132
Alignment:
| Q |
268 |
catcaaaggattccacatacactgctatgtgaataatcacatgcctcaaacatggagtgaaccattggcatatattttttgcaataaagaaaatagatat |
367 |
Q |
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| T |
12830334 |
catcaaaggattccacatacactgctatgtgaataatcacatgcctcaaacatggagtgaaccattggcatatagtttttgcaataaagaaaatagatat |
12830235 |
T |
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| Q |
368 |
catgaagtgttaaaggacaaatagattaagatgtatttcttacgtgtatagcaagtaactatgtgtaattgatctagcttaacaattgtaactgagttag |
467 |
Q |
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| T |
12830234 |
catgaagtgttaaaggacaaatagattaagatgtatttcttacgtgtatagcaagtaactatgtgtaattgatctagcttaacaattgtaactgagttag |
12830135 |
T |
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| Q |
468 |
tta |
470 |
Q |
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||| |
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| T |
12830134 |
tta |
12830132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 12830594 - 12830398
Alignment:
| Q |
8 |
aattgcacatttctgcatgcaaaagatagaaaatgttgaacttgaaatgtttatccaggctgagaaggaaattgcacaagcaagagtggacatagctcat |
107 |
Q |
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| T |
12830594 |
aattgcacatttatgcatgcaaaagatagaaaatgttgaacttgaaatgtttatccaggctgagaaggaaattgcacaagcaagagtggacatagctcat |
12830495 |
T |
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| Q |
108 |
gaagttaggttggcaaaagaggcagaagcacaaatggacctacatgtgacaaaagcaggagagagagctgagaaagaaatagagaaacattcatcca |
204 |
Q |
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| T |
12830494 |
gaagttaggttggcaaaagaggcagaagcacaaatggacctacatgtgacaaaagcaggagagagagctgagaaagaaatagagaaacattcatcca |
12830398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 375 - 467
Target Start/End: Complemental strand, 25974107 - 25974015
Alignment:
| Q |
375 |
tgttaaaggacaaatagattaagatgtatttcttacgtgtatagcaagtaactatgtgtaattgatctagcttaacaattgtaactgagttag |
467 |
Q |
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| T |
25974107 |
tgttaaaggacaaatagattgagatgtatctgttacttgtatagcaagtaactatgtgtaattgatctagcttaacaattatagttgagttag |
25974015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2028 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold2028
Description:
Target: scaffold2028; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 189 - 261
Alignment:
| Q |
398 |
atgtatttcttacgtgtatagcaagtaactatgtgtaattgatctagcttaacaattgtaactgagttagtta |
470 |
Q |
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| T |
189 |
atgtatctgttacttgtatagcaagtaactatgtgtaattgatctagcttaacaaatgtaactgagttagtta |
261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0571 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0571
Description:
Target: scaffold0571; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 6218 - 6146
Alignment:
| Q |
398 |
atgtatttcttacgtgtatagcaagtaactatgtgtaattgatctagcttaacaattgtaactgagttagtta |
470 |
Q |
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|||||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6218 |
atgtatctgttacttgtatagcaagtaactatgtgtaattgatctagcttaacaaatgtaactgagttagtta |
6146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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