View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5116_low_6 (Length: 227)
Name: NF5116_low_6
Description: NF5116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5116_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 4505372 - 4505536
Alignment:
| Q |
41 |
gtatttgacacatcaa-gcaaattaaatacagtaagcatcaccaagagtcattagtgagaatacaatatatttc-tccttc-nnnnnnnnnnnnntacaa |
137 |
Q |
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| T |
4505372 |
gtatttgacacatcaaagcaaattaaatacagtaagcatcaccaagaggcattagtgagaatacaatatatttcttccttcaaaaaaaaaaaaaatacaa |
4505471 |
T |
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| Q |
138 |
tatatttcttaaaccgaatctaaagttttagcatgttttcttattatcttttatggggtgttgat |
202 |
Q |
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| T |
4505472 |
tatatttcttaaaccgaatctaaagttttagcatgttttcttattattttttatggagtgttgat |
4505536 |
T |
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