View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5117-Insertion-2 (Length: 839)
Name: NF5117-Insertion-2
Description: NF5117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5117-Insertion-2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 700; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 26 - 832
Target Start/End: Original strand, 28320098 - 28320902
Alignment:
| Q |
26 |
tctatatatagtatcaagactttacccttcttcatgctaacaaatttgtagcaagccatgcctctatacaatacaaaacccgttttcttaatccttcttc |
125 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28320098 |
tctatatatagtatcaagactttacccttcttcatgctaacaaatttgtagaaagccatgcctctatacaatacaaaacccgttttcttaatccttcttc |
28320197 |
T |
|
| Q |
126 |
cactcctcatgctacatcgcaattgggatttatcttttgaactctcgaatttttccggtccatatataaacgacatcatcacctaccaaggtgatgccgt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
28320198 |
cactcctcatgctacatcgcaattgggatttatcttttgaactctcgaatttttacggtccatatataaacgacatcatcaactacgaaggtgatgccgt |
28320297 |
T |
|
| Q |
226 |
tgaatcaaatggtaccattcaacttactaaagtaaataacggcataaacatgccatttagtgttggcagagcctcttatgctattccaatacgccttttt |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28320298 |
tgaatcaaatggtaccattcaacttactaaagtaaataacggcataaacatgccatatagtgttggcagagcctcttatgctattccaatacgccttttt |
28320397 |
T |
|
| Q |
326 |
gaccctacaattggacttgctagttttacaaccacattctcttttcttgtaacatcaaatggacaaagtaaaggagatggaattgcattttttatggtcg |
425 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
28320398 |
gaccctgcaattggacttgctagttttacaaccacattctcttttcttgtaacatcaaatggacaaagtaaaggagatggaattgcattttttatggctg |
28320497 |
T |
|
| Q |
426 |
gaccaaatcactcgaagatccctgaatcttcgagtggtgggtatcttggccttttcagccccgagacggcttttaaaccaattataaatcaaattgttgc |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28320498 |
gaccaaatcactcgaagatccctgaatcttcgagtggtgggtatcttggccttttcagccccgagacggcttttaaaccaattataaatcaaattgttgc |
28320597 |
T |
|
| Q |
526 |
agttgaattcgatacgtttgcaaatgagtgggacccaccatatgcgcatgtgggtattaatgcaaattcgatcagatccaaaacaacggggagatgggga |
625 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||| |||||||||| |
|
|
| T |
28320598 |
agttgaattcgatacgtttgcaaatgagtgggacccaccatatgcgcatgtgggtattaatgcaaattccatccgttccgaaacaacggagagatgggga |
28320697 |
T |
|
| Q |
626 |
attgatagtgttgagagcaatttatcaacggtggttgctacagttagttatgataaatcgtaatgatactttaagcgtcgttgtaaatacggtgaatgga |
725 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
28320698 |
attgatagtgttgagagcaatttatcaacggtggttgctacagttagttatgat-aatcgtaatgatactttaagcgtcattgtaaatacggtgaatgga |
28320796 |
T |
|
| Q |
726 |
actacaattagcctttcatgggtgggctgatttga-gggatatctgccctgaatggattatcgttgggttctctggtgccacaggaggattggtgaaaac |
824 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||| |||| |
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| T |
28320797 |
actacaattagcctttcatgggt-ggctgatttgaggggatatctg-cctgattggattatcgttgggttctccggtgccacgggaggattggttgaaac |
28320894 |
T |
|
| Q |
825 |
acacaaga |
832 |
Q |
| |
|
|||||||| |
|
|
| T |
28320895 |
acacaaga |
28320902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 26 - 832
Target Start/End: Original strand, 28315790 - 28316595
Alignment:
| Q |
26 |
tctatatatagtatcaagactttacccttcttcatg-ctaacaaatttgtagcaagccatgcctctatacaatacaaaacccgttttcttaatccttctt |
124 |
Q |
| |
|
|||||||||||||| | |||||||| ||||| || ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28315790 |
tctatatatagtattaggactttactcttctccacatctaacaaatttatagatagccatgcctctatacaatacaaaacccgttttcttaatccttctt |
28315889 |
T |
|
| Q |
125 |
ccactcctcatgctacatcgcaattgggatttatcttttgaactctcgaatttttccggtccatatataaacgacatcatcacctaccaaggtgatgccg |
224 |
Q |
| |
|
|||||||||||||| |||| |||||| |||||||||||||| |||||||||||| |||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
28315890 |
ccactcctcatgctccatcataattggaatttatcttttgaattctcgaatttttttggtccatatagaaacgaaatcatcacctaccaaggtgatgcca |
28315989 |
T |
|
| Q |
225 |
ttgaatcaaatggtaccattcaacttactaaagtaaataacggcataaacatgccatttagtgttggcagagcctcttatgctattccaatacgcctttt |
324 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
28315990 |
ttgcatcaaatggtaccattcaacttactaaagtagaaaacggcataaacaagccatttagtgttggcagagcctcttatgctattccaatacaccttta |
28316089 |
T |
|
| Q |
325 |
tgaccctacaattggacttgctagttttacaaccacattctcttttcttgtaacatcaaatggacaaagtaaaggagatggaattgcattttttatggtc |
424 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| || || |
|
|
| T |
28316090 |
tgaccctaaaattggtcttgtaagttttacaaccacattctcttttattgtaagatcaaatggacaaatcgtcggagatggaattgcatttttcattgtt |
28316189 |
T |
|
| Q |
425 |
ggaccaaatcactcgaagatccctgaatcttcgagtggtgggtatcttggccttttcagccccgagacggcttttaaaccaattataaatcaaattgttg |
524 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||| |
|
|
| T |
28316190 |
ggacctaatcactcgaagattccagaatcttcgagtggtgggtatcttggccttttcagtcctgagactgcttttaatagccttcaaaatcaaattgttg |
28316289 |
T |
|
| Q |
525 |
cagttgaattcgatacgtttgcaaatgagtgggacccaccatatgcgcatgtgggtattaatgcaaattcgatcagatccaaaacaacggggagatgggg |
624 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || | || | ||||| |||||||| |
|
|
| T |
28316290 |
ccgttgaatttgatacgtttgcaaatgagtgggacccaccatatgcgcatgtgggtattaatataaattccattcgttcgctacaaacggaaagatgggg |
28316389 |
T |
|
| Q |
625 |
aattgatagtgttgagagcaatttatcaacggtggttgctacagttagttatgataaatcgtaatgatactttaagcgtcgttgtaaatacggtgaatgg |
724 |
Q |
| |
|
|||||| |||| ||| | | |||| ||||||||||||||||| ||| ||||||| || | | | |||||||| ||||||||| |||||||| | |
|
|
| T |
28316390 |
aattgagagtggtgataacgttttaacaacggtggttgctacaattaattatgat-gctctttcacaaaggttaagcgttgttgtaaattcggtgaatag |
28316488 |
T |
|
| Q |
725 |
aactacaattagcctttcatgggtgggctgatttgaggg-atatctgccctgaatggattatcgttgggttctctggtgccacaggaggattggtgaaaa |
823 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||||| || |||| || |||||| ||||||||||||||||||||||||| |||||||| || ||| |
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|
| T |
28316489 |
aactacaattagcctttcagaggt-gattgatttgagggcatttctg-ccggaatgggttatcgttgggttctctggtgccacgggaggatttgttgaaa |
28316586 |
T |
|
| Q |
824 |
cacacaaga |
832 |
Q |
| |
|
||||||||| |
|
|
| T |
28316587 |
cacacaaga |
28316595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 62 - 594
Target Start/End: Original strand, 28312690 - 28313219
Alignment:
| Q |
62 |
ctaacaaatttgtagcaagccatgcctctatacaatacaaaacccgttttcttaatccttcttccactcctcatgctacatcgcaattgggatttatctt |
161 |
Q |
| |
|
|||||| |||| ||| ||| |||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||| ||| ||| | |
|
|
| T |
28312690 |
ctaacagatttatagagagcaatgcctctgtacaatacaaaacctgttttcttaatccttattccactcctcatgctgcatcgcaattcaaattcatcat |
28312789 |
T |
|
| Q |
162 |
ttgaactctcgaatttttccggtccatatataaacgacatcatcacctaccaaggtgatgccgttgaatcaaatggtaccattcaacttactaaagtaaa |
261 |
Q |
| |
|
| || || | ||| || |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || | |
|
|
| T |
28312790 |
tcaaattcccaaatgcttttggtccatatagaaacgacatcatcacctaccaaggtgatgccgttgaatctaatggcaccattcaacttactaatataga |
28312889 |
T |
|
| Q |
262 |
taacggcataaacatgccatttagtgttggcagagcctcttatgctattccaatacgcctttttgaccctacaattggacttgctagttttacaaccaca |
361 |
Q |
| |
|
|||| | ||||||||| | ||||| ||||||||||||||| | ||||||||||||||| ||||| | ||| || ||||| | ||||||||||||| |
|
|
| T |
28312890 |
aaacgatacaaacatgccttatagtgcgggcagagcctcttatattcttccaatacgcctttgggaccccaaaatcggtcttgcgaattttacaaccaca |
28312989 |
T |
|
| Q |
362 |
ttctcttttcttgtaacatcaaatggacaaagtaaaggagatggaattgcattttttatggtcggaccaaatcactcgaagatccctgaatcttcgagtg |
461 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||| || | |||| || ||||||| | | | |||| ||||||||||||| | ||||||||||||| |
|
|
| T |
28312990 |
ttctcttttcttgttacatcgaatgaacaaagtcctggtgttggagtttcatttttca---ttgcaccatatcactcgaagatatcagaatcttcgagtg |
28313086 |
T |
|
| Q |
462 |
gtgggtatcttggccttttcagccccgagacggcttttaaaccaattataaatcaaattgttgcagttgaattcgatacgtttgcaaatgagtgggaccc |
561 |
Q |
| |
|
|||||||||||| ||| | || |||||||| | |||||| | || ||||||||||||||||||||||||||| || ||| ||||||| ||||| |
|
|
| T |
28313087 |
atgggtatcttggtcttgtgagtcccgagactgtttttaatacctttcaaaatcaaattgttgcagttgaattcgacacctttcaaaatgagctggacca |
28313186 |
T |
|
| Q |
562 |
accatatgcgcatgtgggtattaatgcaaattc |
594 |
Q |
| |
|
|| |||||||||||||||| ||| |||||| |
|
|
| T |
28313187 |
tacagttgcgcatgtgggtatttatgtaaattc |
28313219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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