View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5117_high_1_N (Length: 593)
Name: NF5117_high_1_N
Description: NF5117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5117_high_1_N |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 22 - 593
Target Start/End: Original strand, 1257283 - 1257854
Alignment:
| Q |
22 |
gcgactaaccatagttcgaaatagctgcatcaacattaagcttgtagaagtcttgaaaaggagcctactgacttaagaatgattaacaattttttcatga |
121 |
Q |
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| T |
1257283 |
gcgactaaccatagttcgaaatagctgcatcaacattaagcttgtagaagtcttgaaaaggagccaactgacttaagtatgattaacaaatttttcatga |
1257382 |
T |
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| Q |
122 |
gaattgtagatccatnnnnnnnnnnnnnnnnnctttagaagtgtttacaccgaaaaataattatttttcaatcgatagaaggttatcggaagagtataat |
221 |
Q |
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| T |
1257383 |
gaattgtagatccataaaaaataaaataaaaactttagaagtgtttacaccgaaaaataattatttttcaatcgatataaggttatgggaagagtataat |
1257482 |
T |
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| Q |
222 |
agccgagtttggatatatgtttcttcctcaagtccacttactagtatgtaggttttgaaggcatcaagttggatcaaagatgagtaaaactagacaatga |
321 |
Q |
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| T |
1257483 |
agccgagtttggatatatgtttctttctcaagtccacttactagtatgtgcgttttgaagacatcaagttggatcaaagatgagtaaaactagacaatga |
1257582 |
T |
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| Q |
322 |
ggcattaaacccacactctatttgtagcccctctaatggcaaagggtcgtgattaaggaagcacatattgtggaaaggttgtccactatgaaccttgtca |
421 |
Q |
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| T |
1257583 |
ggcattaaacccacactctatttgtagcccctctaatggcaaagggtcgtgattaaggaagcacgtattgtggaaaggttgtccactatgaaccttgtca |
1257682 |
T |
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| Q |
422 |
acggatcatgtcataaagttgaagctgacagtcgaatatgggatggcacaaacacctcaacaaggaaaaaccaacacacatcttgcagaaaaagccgaga |
521 |
Q |
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| T |
1257683 |
acggatcatgtcataaagttgaagctgacagtcgaatctgggatggcacaaacacctcaacaaggaaaaaccaacacacatcttgcagaaaaagccgaga |
1257782 |
T |
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| Q |
522 |
gaggctatagactattggccatgtcgtttaggccaacatgaaattttgcctataaatacctatcataatgta |
593 |
Q |
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| T |
1257783 |
gaggctatagactattggccatgtcgtttaggccaacatgaaattttgcctataaatacctatcataatgta |
1257854 |
T |
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