View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5117_high_3 (Length: 356)
Name: NF5117_high_3
Description: NF5117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5117_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 96 - 355
Target Start/End: Complemental strand, 49060936 - 49060677
Alignment:
| Q |
96 |
acatttggcagcatgtaattaggaagaagaagtctgatccaaaggagaaaaacaaaaccagtaaaccagacaaaactacttctgacagtggcagtggact |
195 |
Q |
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| T |
49060936 |
acatttggcagcatgtaattaggaagaagaagtctgatccaaaggagaaaaacaaaaccagtaaaccagacaaaactacttctgacagtggcagtggact |
49060837 |
T |
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| Q |
196 |
aagatctgcaggagcagaaaattcagatgaaaatggaaagctgactaagaaaagaaaggatcaggatgaagaggaagacgaggataaagagaatggtaat |
295 |
Q |
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| T |
49060836 |
aagatctgcaggagcagaaaattcagatgaaaatggaaagctgactaagaaaagaaaggatcaggatgaagacgaagacgaggataaagagaatggtaat |
49060737 |
T |
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| Q |
296 |
gacaatgaggacccatcagctcagaagaagcctcgggttgtttggtctgtggtgctgcac |
355 |
Q |
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| T |
49060736 |
gacaatgaggacccatcagctcagaagaagcctcgggttgtttggtctgtggagctgcac |
49060677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 345
Target Start/End: Complemental strand, 47274489 - 47274398
Alignment:
| Q |
254 |
gatcaggatgaagaggaagacgaggataaagagaatggtaatgacaatgaggacccatcagctcagaagaagcctcgggttgtttggtctgt |
345 |
Q |
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| T |
47274489 |
gatcaggatgaagacaaagatgaggataaagagaatggtcatgacaatgaggacccatgagctcagaagaagccccctgttgtttggtctgt |
47274398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 355
Target Start/End: Complemental strand, 47275103 - 47275044
Alignment:
| Q |
296 |
gacaatgaggacccatcagctcagaagaagcctcgggttgtttggtctgtggtgctgcac |
355 |
Q |
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| T |
47275103 |
gacaatgaggacctatcagctcagaagaagtcccagtctgtttggtctgtggagctgcac |
47275044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 37704455 - 37704559
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatt |
100 |
Q |
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| T |
37704455 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatt |
37704554 |
T |
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| Q |
101 |
tggca |
105 |
Q |
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||||| |
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| T |
37704555 |
tggca |
37704559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 37698974 - 37699080
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgaca |
98 |
Q |
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|||||||| |||| |||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |
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| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgaca |
37699073 |
T |
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| Q |
99 |
tttggca |
105 |
Q |
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||||||| |
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| T |
37699074 |
tttggca |
37699080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 37698637 - 37698697
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgtt |
61 |
Q |
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| T |
37698637 |
ccaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgtt |
37698697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 37437521 - 37437624
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatt |
100 |
Q |
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|||||||| |||||||||||||||||| |||||| |||||| ||||||||| |||| | | |||||||||||||||| | |||| |||||||||| | |
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| T |
37437521 |
ccaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgttttaatgt-ggggtgcttttcataaccgtatagtgatatgacaat |
37437619 |
T |
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| Q |
101 |
tggca |
105 |
Q |
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||||| |
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| T |
37437620 |
tggca |
37437624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 48870087 - 48870039
Alignment:
| Q |
294 |
atgacaatgaggacccatcagctcagaagaagcctcgggttgtttggtc |
342 |
Q |
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| T |
48870087 |
atgacaatgatgatccaacagcacagaagaagcctcgagttgtttggtc |
48870039 |
T |
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