View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5118-Insertion-4 (Length: 793)

Name: NF5118-Insertion-4
Description: NF5118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5118-Insertion-4
NF5118-Insertion-4
[»] chr6 (3 HSPs)
chr6 (359-793)||(12196422-12196853)
chr6 (75-345)||(12196105-12196375)
chr6 (7-79)||(12195281-12195353)
[»] chr7 (2 HSPs)
chr7 (417-787)||(6372476-6372849)
chr7 (420-773)||(10332540-10332894)
[»] chr2 (4 HSPs)
chr2 (408-767)||(33684242-33684593)
chr2 (408-767)||(33701296-33701647)
chr2 (268-345)||(33684718-33684795)
chr2 (268-345)||(33701772-33701849)
[»] chr3 (3 HSPs)
chr3 (419-634)||(14639669-14639886)
chr3 (264-345)||(14640022-14640103)
chr3 (264-345)||(39735149-39735230)
[»] chr5 (1 HSPs)
chr5 (36-115)||(22253673-22253752)
[»] chr4 (1 HSPs)
chr4 (286-324)||(9667042-9667080)


Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 359 - 793
Target Start/End: Original strand, 12196422 - 12196853
Alignment:
Q  359 gtctcttctaatgtaccattcagaaatgcaaactttactaattgctaacgctataaccaatctgatagtttcatgtcttgcaactg-tgagaaaacttta 457  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  12196422 gtctcttctaatgtaccattcagaaatgcaaactttactagttgctaatactataaccaatctgatagtttcatgtcttgcatctggtgagaaaacttta 12196521  T
Q  458 gtgtaatcaaaactttccttctaaataaacctctagccaaaagccttgctttgtgcttcacaatcttcccttcttgattaaattttaacttgaaaaccaa 557  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12196522 gtgtaatcaaaaccttccttctaaataaacctctagccaaaagccttgcttcgtgattcacaatcttcccttcttgattaaattttaacttgaaaaccaa 12196621  T
Q  558 ttttatatctattgccttctttccatctcgaagcttaatcagttcacaagtctgactcttctcaatagattttagttcatctatcatagcttccttcaat 657  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  12196622 ttttatatctattgccttttttccatctcgaagctttatcagttcacaagtctgactcttctcaatagattttagttcacctatcatagcttcctttaat 12196721  T
Q  658 gccttatcacatagtgcagctatgtaatctaatggctcgatgtctgctcgcattgtaaaatgcaccaattcaccatcactacctacttcttcatcaccag 757  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||     ||| ||||||||||    
T  12196722 gccttatcacatagtgcagctatgtaatctaatggctcgatgtctgctagcattgcaaaatgcaccaattaaccatcactag----ttcatcatcaccag 12196817  T
Q  758 ttacctgacagtcttctaaacttcttggaatttgtc 793  Q
    ||||||||||||||||| ||||||||||||||||||    
T  12196818 ttacctgacagtcttctgaacttcttggaatttgtc 12196853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 75 - 345
Target Start/End: Original strand, 12196105 - 12196375
Alignment:
Q  75 ctttggatgagctcgcttttcccaccacctgaagaaacctaagatcgctagacgagcaaatttttctaggaaaatatgcacnnnnnnnacttatatataa 174  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  12196105 ctttggatgagctcgcttttccctccacctgaagaaacttaagatcgctagacgagcaaatttttctaggaaaatatgcactttttttacttatatataa 12196204  T
Q  175 atagatgtaatacacaattcagagatatcttacacatcttaaacttgttgttagagagaacggagaggagaacataaattcatcattgcagaatttgtca 274  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  12196205 atagatgtaatacacaattcagagatatcttacgcatcttaaacttgttgttagagagaacggagaggagaacatagattcatcattgcagaatttatca 12196304  T
Q  275 attcttttattccaggctctagttgcttgtttcaaaccatataaggctttgctcaatctgaacactctatc 345  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12196305 attcttttatttcaggctctaggtgcttgtttcaaaccatataaggctttgctcaatctgaacactctatc 12196375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 12195281 - 12195353
Alignment:
Q  7 aagaagcaagtgaacattcgataggaaaacaacatttctcctagccaagtaaggcggtgttagtgaccctttg 79  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12195281 aagaagcaagtgaacattcgataggcaaacaacatttctcctagccaagtaaggcggtgttagtgaccctttg 12195353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 3e-81; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 417 - 787
Target Start/End: Original strand, 6372476 - 6372849
Alignment:
Q  417 aatctgatagtttcatgtctt-gcaactg-tgagaaaactttagtgtaatcaaaactttccttcta-aataaacctctagccaaaagccttgctttgtgc 513  Q
    |||||||||||||||||| || |||| || ||||||||||| |||||||||||| | ||| ||||| || ||||||||||||| ||| |||||||| ||     
T  6372476 aatctgatagtttcatgtttttgcaattggtgagaaaacttcagtgtaatcaaagccttcattctataagaaacctctagccacaagtcttgctttttga 6372575  T
Q  514 ttcacaatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttctttccatctcgaagcttaatcagttcacaagtctgac 613  Q
    |||||||||||||| ||  | || ||||| |||||||| ||| |||| | ||||||||| ||||||| |||| |||||| || | |||| ||||||| |     
T  6372576 ttcacaatcttcccgtcagggttcaatttaaacttgaagacccatttgacatctattgctttctttcaatctagaagctgaaacggttcccaagtcttat 6372675  T
Q  614 tcttctcaatagattttagttcatctatcatagcttccttcaatgccttatcacatagtgcagctatgtaatctaatggctcgatgtctgctcgcattgt 713  Q
    |||||||||||||||||||||||||||| |||||||||||| ||  ||||||||||||||||||| | ||||||||||||||  |||||||| ||||||     
T  6372676 tcttctcaatagattttagttcatctattatagcttccttccatttcttatcacatagtgcagctttataatctaatggctcagtgtctgctagcattgc 6372775  T
Q  714 aaaatgcaccaattcaccatcactacctacttcttcatcaccagttacctgacagtcttctaaacttcttggaa 787  Q
     ||||||||||||||||||||||| |||||||| ||||||| |||||||| ||| ||||| || || |||||||    
T  6372776 gaaatgcaccaattcaccatcactgcctacttcatcatcactagttacctaacaatcttccaatctccttggaa 6372849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 420 - 773
Target Start/End: Complemental strand, 10332894 - 10332540
Alignment:
Q  420 ctgatagtttcatgtcttgcaactg-tgagaaaactttagtgtaatcaaaactttccttcta-aataaacctctagccaaaagccttgctttgtgcttca 517  Q
    ||||| |||||||||| |||||||| ||||||||||||||| || | ||| | ||||||| | || ||  || |||| | |||||| |||||||||||||    
T  10332894 ctgatggtttcatgtcatgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttca 10332795  T
Q  518 caatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttctttccatctcgaagcttaatcagttcacaagtctgactctt 617  Q
    |||||||||||||  | || ||||| | ||| |||||| |||| | ||| ||||| ||||||||| |  ||||||| || ||||| || || ||| ||||    
T  10332794 caatcttcccttcaaggttcaatttcagcttaaaaacccatttgaaatcaattgctttctttccaccaggaagcttgattagttc-catgtttgattctt 10332696  T
Q  618 ctcaatagattttagttcatctatcatagcttccttcaatgccttatcacatagtgcagctatgtaatctaatggctcgatgtctgctcgcattgtaaaa 717  Q
    |||||||||  ||||||||||||||||| |||  ||| |||| |||||||| | |||| || | ||||||| | |||| |  ||||||  ||||| |||     
T  10332695 ctcaatagacattagttcatctatcatatcttatttccatgctttatcacacattgcaactttctaatctacttgctcaaaatctgctaacattgcaaag 10332596  T
Q  718 tgcaccaattcaccatcactacctacttcttcatcaccagttacctgacagtcttc 773  Q
    || ||||  ||||||||||| |||||||| ||||||  ||||| |||| |||||||    
T  10332595 tgtaccagctcaccatcacttcctacttcatcatcaggagttagctgatagtcttc 10332540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 7e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 408 - 767
Target Start/End: Complemental strand, 33684593 - 33684242
Alignment:
Q  408 gctataaccaatctgatagtttcatgtcttgcaactg-tgagaaaactttagtgtaatcaaaactttccttctaaataaa-cctctagccaaaagccttg 505  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| ||| ||||  | ||| ||||||||||  |  ||||    
T  33684593 gctataatcaatctgatagtttcatgccttgcaactggtgagaaaacttcagtgtaatcaaaaccttctttctgtagaaaacctctagccactaatcttg 33684494  T
Q  506 ctttgtgcttcacaatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttctttccatctcgaagcttaatcagttcaca 605  Q
    |||||||          ||||||||  |||| ||||| || ||||||||  |||| | |||| | || ||||| |||||  | || | |||||||||       
T  33684493 ctttgtg----------ttcccttcaggattcaatttcaatttgaaaacttatttgacatctgtagctttcttaccatcagggagttgaatcagttcttg 33684404  T
Q  606 agtctgactcttctcaatagattttagttcatctatcatagcttccttcaatgccttatcacatagtgcagctatgtaatctaatggctcgatgtctgct 705  Q
     |||||| ||||||||||||| || |  ||||||||||||||||||||| ||   |||||||||||||||||| ||||||||||||||||   ||||||     
T  33684403 tgtctgattcttctcaatagaattcaactcatctatcatagcttccttccatttattatcacatagtgcagctttgtaatctaatggctcagagtctgca 33684304  T
Q  706 cgcattgtaaaatgcaccaattcaccatcactacctacttcttcatcaccagttacctgaca 767  Q
     |||||  |||||||||||||||||||| |  ||||||||| |||||||||| ||| |||||    
T  33684303 agcatttcaaaatgcaccaattcaccattagaacctacttcatcatcaccagatacttgaca 33684242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 408 - 767
Target Start/End: Complemental strand, 33701647 - 33701296
Alignment:
Q  408 gctataaccaatctgatagtttcatgtcttgcaactg-tgagaaaactttagtgtaatcaaaactttccttctaaataaa-cctctagccaaaagccttg 505  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| ||| ||||  | ||| ||||||||||  |  ||||    
T  33701647 gctataatcaatctgatagtttcatgccttgcaactggtgagaaaacttcagtgtaatcaaaaccttctttctgtagaaaacctctagccactaatcttg 33701548  T
Q  506 ctttgtgcttcacaatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttctttccatctcgaagcttaatcagttcaca 605  Q
    |||||||          ||||||||  |||| ||||| || ||||||||  |||| | |||| | || ||||| |||||  | || | |||||||||       
T  33701547 ctttgtg----------ttcccttcaggattcaatttcaatttgaaaacttatttgacatctgtagctttcttaccatcagggagttgaatcagttcttg 33701458  T
Q  606 agtctgactcttctcaatagattttagttcatctatcatagcttccttcaatgccttatcacatagtgcagctatgtaatctaatggctcgatgtctgct 705  Q
     |||||| ||||||||||||| || |  ||||||||||||||||||||| ||   |||||||||||||||||| ||||||||||||||||   ||||||     
T  33701457 tgtctgattcttctcaatagaattcaactcatctatcatagcttccttccatttattatcacatagtgcagctttgtaatctaatggctcagagtctgca 33701358  T
Q  706 cgcattgtaaaatgcaccaattcaccatcactacctacttcttcatcaccagttacctgaca 767  Q
     |||||  |||||||||||||||||||| |  ||||||||| |||||||||| ||| |||||    
T  33701357 agcatttcaaaatgcaccaattcaccattagaacctacttcatcatcaccagatacttgaca 33701296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 33684795 - 33684718
Alignment:
Q  268 tttgtcaattcttttattccaggctctagttgcttgtttcaaaccatataaggctttgctcaatctgaacactctatc 345  Q
    |||||||||||||||||| |||||||| | ||||||||| || ||||| || | |||| ||| |||||||||||||||    
T  33684795 tttgtcaattcttttatttcaggctcttggtgcttgttttaagccatacaaagttttgttcagtctgaacactctatc 33684718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 33701849 - 33701772
Alignment:
Q  268 tttgtcaattcttttattccaggctctagttgcttgtttcaaaccatataaggctttgctcaatctgaacactctatc 345  Q
    |||||||||||||||||| |||||||| | ||||||||| || ||||| || | |||| ||| |||||||||||||||    
T  33701849 tttgtcaattcttttatttcaggctcttggtgcttgttttaagccatacaaagttttgttcagtctgaacactctatc 33701772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 419 - 634
Target Start/End: Complemental strand, 14639886 - 14639669
Alignment:
Q  419 tctgatagtttcatgtcttgcaactg-tgagaaaactttagtgtaatcaaaactttccttcta-aataaacctctagccaaaagccttgctttgtgcttc 516  Q
    |||||| ||||||||||||| ||||| |||||| |||| ||| |||||||| | ||||||||  || ||| ||||||||| ||| || ||||||||||||    
T  14639886 tctgatggtttcatgtcttggaactggtgagaacacttcagtataatcaaagccttccttcttcaagaaaactctagccacaagtctagctttgtgcttc 14639787  T
Q  517 acaatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttctttccatctcgaagcttaatcagttcacaagtctgactct 616  Q
    ||||||||||||||  |||| ||||| ||||| || ||| |||| | ||||||||| ||||| |||||    || ||||||| ||| || |||||| |||    
T  14639786 acaatcttcccttcaggattcaatttcaacttaaagacccatttaacatctattgctttcttaccatcagatagtttaatcaattcccatgtctgattct 14639687  T
Q  617 tctcaatagattttagtt 634  Q
    || || ||||||||||||    
T  14639686 tcccactagattttagtt 14639669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 264 - 345
Target Start/End: Complemental strand, 14640103 - 14640022
Alignment:
Q  264 agaatttgtcaattcttttattccaggctctagttgcttgtttcaaaccatataaggctttgctcaatctgaacactctatc 345  Q
    ||||||| ||||||||||||||||| ||||||| |||||||||||| ||||| || |||||  | ||| |||| ||||||||    
T  14640103 agaatttttcaattcttttattccacgctctaggtgcttgtttcaatccatacaaagctttatttaatttgaaaactctatc 14640022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 345
Target Start/End: Complemental strand, 39735230 - 39735149
Alignment:
Q  264 agaatttgtcaattcttttattccaggctctagttgcttgtttcaaaccatataaggctttgctcaatctgaacactctatc 345  Q
    ||||| |||| ||| |||||||||||||||||| ||||||||||||  |||| || |||||| ||||| | || ||||||||    
T  39735230 agaatatgtcgatttttttattccaggctctaggtgcttgtttcaagtcatacaaagctttgttcaatttaaatactctatc 39735149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 22253752 - 22253673
Alignment:
Q  36 caacatttctcctagccaagtaaggcggtgttagtgaccctttggatgagctcgcttttcccaccacctgaagaaaccta 115  Q
    |||||||||||| ||  || ||||||| ||||||||||| |||||||||| | ||||||| | ||| |||||||||||||    
T  22253752 caacatttctccaagaaaaataaggcgatgttagtgaccttttggatgagttggcttttcactccatctgaagaaaccta 22253673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 9667080 - 9667042
Alignment:
Q  286 ccaggctctagttgcttgtttcaaaccatataaggcttt 324  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  9667080 ccaggctctaggagcttgtttcaaaccatataaggcttt 9667042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University