View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5118-Insertion-5 (Length: 654)
Name: NF5118-Insertion-5
Description: NF5118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5118-Insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 696555 - 696239
Alignment:
| Q |
9 |
ttcgagctacctacaaactcaaatatgaattattcaatatcctttaaattgctcacattttaaaaagaatgtttattgaaagttacgaaacgattgattg |
108 |
Q |
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| T |
696555 |
ttcgagctacctacaaactcaaagatggattgttcaatatccttcaaattgctcacattttaaaaagaatgtttattgaaagatacgaaacgattgattg |
696456 |
T |
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| Q |
109 |
aataatttaaagttaattgaacaatcatcaaactcaaataccatgattgattagcgataatatttaggtgatttcaatatgttgagtgatgtttaaaaga |
208 |
Q |
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| T |
696455 |
aataatttaaaattaattgaacaatcatcaaactcaaataccatgattgattagcgataatatttaggtgatttcaatatgttaagtgatgtttaaaaga |
696356 |
T |
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| Q |
209 |
taactccaaggataagggtataaagtatacacctcaagatttttaagaacgttatgaactccttaaaaactaagtaaaaacatcaaactaaaatcattat |
308 |
Q |
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| T |
696355 |
taactccaaggataagggtataaagtatacacctcaagatttttaagaacgttatgaactccttaaaaactaagtaaaaacatcaaactaaaatcattat |
696256 |
T |
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| Q |
309 |
tcattcaagacagcagc |
325 |
Q |
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| T |
696255 |
tcattcaagacagcagc |
696239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 372 - 653
Target Start/End: Complemental strand, 696197 - 695916
Alignment:
| Q |
372 |
gtaaccaccatcaagtatgaagtttcccattctcaatcaaattgatcatggttgtttcctttaccctaaagtttcatcgttatannnnnnncatttcaca |
471 |
Q |
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| T |
696197 |
gtaaccaccatcaagtatgaagtttcccactctcaatcaaattgatcatggttgtttccttttccctaaaatttcatcattatatttttttcatttcaca |
696098 |
T |
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| Q |
472 |
tcaaaagacattgatgttgatatgtaatagtataaagcaaacaagattttattgaaaagaatcaaataattcattcactttcaccttcactcttgcatac |
571 |
Q |
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| T |
696097 |
tcaaaagacattgatgttgatatgtaatagtataaagcaaacaagattttattgaaaagaatcaaataattcattcactttcaccttcactcttgcatac |
695998 |
T |
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| Q |
572 |
aaacaaatagttagtcatcgatttgatgtactaagtcatacttagctgcgataaatatttgattacggcacattttttacaa |
653 |
Q |
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| T |
695997 |
aaacaaatagttagtcatcgatttgatgcactaagtcatacttagctgcgataaatatttgattacagcacattttttacaa |
695916 |
T |
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