View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5118-Insertion-7 (Length: 388)
Name: NF5118-Insertion-7
Description: NF5118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5118-Insertion-7 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 37 - 388
Target Start/End: Original strand, 28320110 - 28320463
Alignment:
| Q |
37 |
atcaagaatttacccttcttcatggcaaaaaatttgtggtacgccacgcgtctatacaatacaaaacccgttttcttaatccttcttccactcctcatgc |
136 |
Q |
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| T |
28320110 |
atcaagactttacccttcttcatgctaacaaatttgtagaaagccatgcctctatacaatacaaaacccgttttcttaatccttcttccactcctcatgc |
28320209 |
T |
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| Q |
137 |
tacatcgcaattgggatttatcttttgaactctcgaatttttccggtccatatataaacgacatcatcacctaccaaggtgatgccgttgaatcaaatgg |
236 |
Q |
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| T |
28320210 |
tacatcgcaattgggatttatcttttgaactctcgaatttttacggtccatatataaacgacatcatcaactacgaaggtgatgccgttgaatcaaatgg |
28320309 |
T |
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| Q |
237 |
taccattcaacttactaaagtaaataacggcttaaacatgccatttagtgttggcagatcctcttatgctattccaatacgcctttttgaccctac-att |
335 |
Q |
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| T |
28320310 |
taccattcaacttactaaagtaaataacggcataaacatgccatatagtgttggcagagcctcttatgctattccaatacgcctttttgaccctgcaatt |
28320409 |
T |
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| Q |
336 |
ggacttgctagttttacaaccacattctcttttcttg-aacatcaaatggacaa |
388 |
Q |
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| T |
28320410 |
ggacttgctagttttacaaccacattctcttttcttgtaacatcaaatggacaa |
28320463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 87 - 388
Target Start/End: Original strand, 28315853 - 28316156
Alignment:
| Q |
87 |
tctatacaatacaaaacccgttttcttaatccttcttccactcctcatgctacatcgcaattgggatttatcttttgaactctcgaatttttccggtcca |
186 |
Q |
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| T |
28315853 |
tctatacaatacaaaacccgttttcttaatccttcttccactcctcatgctccatcataattggaatttatcttttgaattctcgaatttttttggtcca |
28315952 |
T |
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| Q |
187 |
tatataaacgacatcatcacctaccaaggtgatgccgttgaatcaaatggtaccattcaacttactaaagtaaataacggcttaaacatgccatttagtg |
286 |
Q |
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|||| |||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | |||||| |||||| ||||||||||| |
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| T |
28315953 |
tatagaaacgaaatcatcacctaccaaggtgatgccattgcatcaaatggtaccattcaacttactaaagtagaaaacggcataaacaagccatttagtg |
28316052 |
T |
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| Q |
287 |
ttggcagatcctcttatgctattccaatacgcctttttgaccct-acattggacttgctagttttacaaccacattctcttttcttg-aacatcaaatgg |
384 |
Q |
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| T |
28316053 |
ttggcagagcctcttatgctattccaatacacctttatgaccctaaaattggtcttgtaagttttacaaccacattctcttttattgtaagatcaaatgg |
28316152 |
T |
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| Q |
385 |
acaa |
388 |
Q |
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|||| |
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| T |
28316153 |
acaa |
28316156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 91 - 372
Target Start/End: Original strand, 28312720 - 28313002
Alignment:
| Q |
91 |
tacaatacaaaacccgttttcttaatccttcttccactcctcatgctacatcgcaattgggatttatcttttgaactctcgaatttttccggtccatata |
190 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||| ||| ||| || || || | ||| || |||||||||| |
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| T |
28312720 |
tacaatacaaaacctgttttcttaatccttattccactcctcatgctgcatcgcaattcaaattcatcattcaaattcccaaatgcttttggtccatata |
28312819 |
T |
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| Q |
191 |
taaacgacatcatcacctaccaaggtgatgccgttgaatcaaatggtaccattcaacttactaaagtaaataacggcttaaacatgccatttagtgttgg |
290 |
Q |
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| T |
28312820 |
gaaacgacatcatcacctaccaaggtgatgccgttgaatctaatggcaccattcaacttactaatatagaaaacgatacaaacatgccttatagtgcggg |
28312919 |
T |
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| Q |
291 |
cagatcctcttatgctattccaatacgcctttttga-ccctacattggacttgctagttttacaaccacattctcttttcttg |
372 |
Q |
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| T |
28312920 |
cagagcctcttatattcttccaatacgcctttgggaccccaaaatcggtcttgcgaattttacaaccacattctcttttcttg |
28313002 |
T |
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