View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5118_high_12 (Length: 250)
Name: NF5118_high_12
Description: NF5118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5118_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 19240988 - 19240753
Alignment:
| Q |
1 |
ttatcttattaaacttagctacttggttagagaaatttctaactttatttatcatgtgttttgttttgcaggtggttaatccatttaccaaatatccttt |
100 |
Q |
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| T |
19240988 |
ttatcatattaaacctagctacttggttagagaaatttctaactttatttatcatgtattttgttttgcaggtggttaatccatttaccaaatatccttt |
19240889 |
T |
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| Q |
101 |
ataagttctatataaaatcatgtttccaattactgtctcatacatctcaatctcttcgctctaattatattattgactatattcattgattttgttgtta |
200 |
Q |
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| T |
19240888 |
ataagggctatataaa-tcatgtttccaattactgtctcatacatctcaatctcttggctctaattatattattgactatatttattgattttgttaata |
19240790 |
T |
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| Q |
201 |
tagtgtataatattttgttaatagttcaaattggtct |
237 |
Q |
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| T |
19240789 |
taatgtataatatttagttaatagttcaaattggtct |
19240753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 42521844 - 42521883
Alignment:
| Q |
64 |
ttttgcaggtggttaatccatttaccaaatatcctttata |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42521844 |
ttttgcaggtggttaatccatttaccaaatatcctttata |
42521883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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