View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5118_high_13 (Length: 248)
Name: NF5118_high_13
Description: NF5118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5118_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 118 - 231
Target Start/End: Original strand, 24501492 - 24501605
Alignment:
| Q |
118 |
aagagctccttggtcttgatcatgcccttcctcattgaaagaatatgacctcaaatttagcacttgcataacgtacaaaatgaaagatgctctagtcaat |
217 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24501492 |
aagagctccttggtcatgatcatgcccttcctcattgaaagaatatgacctcaaatttagcacctgcataacgtacaaaatgaaagatgctctagtcaat |
24501591 |
T |
|
| Q |
218 |
gacaatatgacatt |
231 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24501592 |
gacaatatgacatt |
24501605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University