View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5118_high_18 (Length: 227)
Name: NF5118_high_18
Description: NF5118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5118_high_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 47242200 - 47242393
Alignment:
| Q |
34 |
ttgctattattacttcttatatttctaaatttttaataaatatagatttaatgcctagttatagctaaaattcttcaaattacatagtttattttctctg |
133 |
Q |
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| T |
47242200 |
ttgctattattacttcttatatttctaaatttttaataaatatagatttaatgcctagttatagctaaaattcttcaaattacatagtttattttctctg |
47242299 |
T |
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| Q |
134 |
ttatattagtaacatataatcatgaggtttgaactattaaattgtttttaagcaaaacttagagtgaaaacacatcacgcagaagtgaaatcac |
227 |
Q |
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| T |
47242300 |
ttatattagtaacatataatcatgaggtttgaactattaaattgtttttaagcaaaacttagagtgaaaacacatcacgcagaagtgaaatcac |
47242393 |
T |
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