View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5118_high_6 (Length: 335)
Name: NF5118_high_6
Description: NF5118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5118_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 43168143 - 43167984
Alignment:
| Q |
31 |
attatactaataaattaatttacaagcacaagtgatttttgataacacatattcttaactcaggaatccgaacagaaagtagctttcatctttttgataa |
130 |
Q |
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| T |
43168143 |
attatactaataaattaatttacaagcacaagtgatttttgataacacatattcttaacttaggaatccgaacagaaagtagctttcatctttttgataa |
43168044 |
T |
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| Q |
131 |
aatcctcgcatttcttgtttaattcttctgtttcatcttcatcaattatcctaagatcat |
190 |
Q |
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| T |
43168043 |
aatcctcacatttcttgtttaattcttctgtttcatcttcatcaattatcctaagatcat |
43167984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 43167915 - 43167851
Alignment:
| Q |
253 |
atcaccaaactcttcacttcttcattttcttctatttgggattcactttccataagagcatttcc |
317 |
Q |
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| T |
43167915 |
atcaccaaactcttcacttcttcattttcttctatttgggattcactttccataagagcatttcc |
43167851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 43154847 - 43154936
Alignment:
| Q |
101 |
aacagaaagtagctttcatctttttgataaaatcctcgcatttcttgtttaattcttctgtttcatcttcatcaattatcctaagatcat |
190 |
Q |
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| T |
43154847 |
aacagaaagtagctttcatttttttgataaaatcctcacatttcttatttagtttctctgtctcatctttatcaattatcataggatcat |
43154936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 43175144 - 43175221
Alignment:
| Q |
112 |
gctttcatctttttgataaaatcctcgcatttcttgtttaattcttctgtttc---atcttcatcaattatcctaaga |
186 |
Q |
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| T |
43175144 |
gctttcatcttttttataaaatcctcacatttcttgttcaattcttgtgtctcatgatcttcatcaatgatcataaga |
43175221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 43310217 - 43310153
Alignment:
| Q |
112 |
gctttcatctttttgataaaatcctcgcatttcttgtttaattcttctgtttcatcttcatcaattatc |
180 |
Q |
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| T |
43310217 |
gctttcatctttttaataaaatcctcacatttcttgttcaattcctctg----atcttcatcaattatc |
43310153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 43154975 - 43155007
Alignment:
| Q |
253 |
atcaccaaactcttcacttcttcattttcttct |
285 |
Q |
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| T |
43154975 |
atcaccaaactcttcacttcttcatcttcttct |
43155007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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