View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5118_low_13 (Length: 250)
Name: NF5118_low_13
Description: NF5118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5118_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 33520380 - 33520541
Alignment:
| Q |
11 |
cacagatcatattgatgctttaatttagagaaaaagctttgtttgttcatatgagttgatgatgctgtagttaggggagtttcccttagcaaacaattat |
110 |
Q |
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| T |
33520380 |
cacagatcatattgatgctttaatttagagaaaaagctttgtttgttcatatgagttgatgatgctgcagttaggggagtttcccttagcaaacaattat |
33520479 |
T |
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| Q |
111 |
taaatgtaaatcgagtaaactgatccctaagtaatgatgtcaattctctccaaacccggacc |
172 |
Q |
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| T |
33520480 |
taaatgtaaatcgagtaaactgatccctaagtaatgatgtcaattctctccaaacccggacc |
33520541 |
T |
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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 33520569 - 33520619
Alignment:
| Q |
200 |
ataaaaagttgtgggttctatggttggttgtggttgagtgcatgtgtgtgt |
250 |
Q |
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| T |
33520569 |
ataaaaagttgtgggttctatggttggttgtggttgagtgcatgtgtgtgt |
33520619 |
T |
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