View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5118_low_2 (Length: 491)
Name: NF5118_low_2
Description: NF5118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5118_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 37603272 - 37602800
Alignment:
| Q |
1 |
gatggaactgtgattctaagtgaaggagggccttctggtaatttagccaaagaatctataaaagtaggccattgcatacaaggtgttatgctaaaatcta |
100 |
Q |
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| T |
37603272 |
gatggaactgtgattctaagtgaaggagggccttctggtaatttagccaaagaatctataaaagtaggccattgcatacaaggtgttatgctaaaatcta |
37603173 |
T |
|
| Q |
101 |
aaatatgtacccttttgaatcccttaattgacttgaaaatttcattgttggaagcacaaaaaccaaacctatgccaaggaattaaatcaacatacccggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37603172 |
aaatatgtacccttttgaatcccttaattgacttgaaaatttcattgttggaagcacaaaaaccaaacctatgccaaggaattaaatcaacatacccggc |
37603073 |
T |
|
| Q |
201 |
gagttcggtaacggacatcaaccttctttgaattgtgtagttacttcctttgaaattcattgaagtaggacaaatccttgaagctctagagattaatgct |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37603072 |
gagttcggtaacggacatcaatcttctttgaattgtgtagttacttcctttgaaattcattgaagtaggacaaatccttgaagctctagagattaatgct |
37602973 |
T |
|
| Q |
301 |
ctcagaaaccatgaagtgagtctttggtttgtgtcacctaatggtgaagcaacgttgtttaagacccacataacttgttgagctaaggttatatcattgc |
400 |
Q |
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|| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37602972 |
cttagaaaccaggaagtgagtctttggttagtgtcacctaatggtgaagcaacgttgtttaagacccacataacttgttgagctaaggttatatcattgc |
37602873 |
T |
|
| Q |
401 |
tttccaaagcacttgcacaatgaagtaagagcttttcaatacatgctccatctaagcttccaagacaaccttt |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37602872 |
tttccaaagcacttgcacaatgaagtaagagcttttcaatacatgctccatctaagcttccaagacaaccttt |
37602800 |
T |
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