View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5118_low_23 (Length: 205)
Name: NF5118_low_23
Description: NF5118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5118_low_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 19241312 - 19241108
Alignment:
| Q |
1 |
tatatatatccactttgatcttgaaattgtaggaccatatattgtatatcaactaaaccctatgaaacacaaacactcctcagattaggggtgtcccagt |
100 |
Q |
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| T |
19241312 |
tatatatatccactttgatcttgaaattgtaggaccatatattttatatcaactaaaccctatgaaacacaaacactcctcagattaggggtgtcccagt |
19241213 |
T |
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| Q |
101 |
atcggacactgtcttttgaatctaatacgtgcaaatattttttcatgtagttttgctatttgtacaactatgtatttcaccgtagctgttgtgggataca |
200 |
Q |
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| T |
19241212 |
atcggacactgtcttttgaatctaatacgtgcaaatattttttcatgtagttttgctatttgtacaactatgtatttcaccgtagctgttgtgggataca |
19241113 |
T |
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| Q |
201 |
caatg |
205 |
Q |
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||||| |
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| T |
19241112 |
caatg |
19241108 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 16184951 - 16184902
Alignment:
| Q |
59 |
cctatgaaacacaaacactcctcagattaggggtgtcccagtatcggaca |
108 |
Q |
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| T |
16184951 |
cctatgaagcacaaacactcctcggattaggcgtgtcccagtgtcggaca |
16184902 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 21211413 - 21211364
Alignment:
| Q |
60 |
ctatgaaacacaaacactcctcagattaggggtgtcccagtatcggacac |
109 |
Q |
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| T |
21211413 |
ctatgaagcacaaacactcctcggattaggagtgtcccagtgtcggacac |
21211364 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 34292621 - 34292585
Alignment:
| Q |
60 |
ctatgaaacacaaacactcctcagattaggggtgtcc |
96 |
Q |
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| T |
34292621 |
ctatgaaacacaaacactcctcagatcaggtgtgtcc |
34292585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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