View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5118_low_3 (Length: 444)

Name: NF5118_low_3
Description: NF5118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5118_low_3
NF5118_low_3
[»] chr7 (7 HSPs)
chr7 (18-247)||(25126485-25126714)
chr7 (270-437)||(25127852-25128019)
chr7 (100-247)||(7015599-7015746)
chr7 (100-247)||(7030957-7031104)
chr7 (100-247)||(7064585-7064732)
chr7 (133-240)||(7060143-7060250)
chr7 (275-315)||(38123796-38123836)
[»] scaffold1302 (1 HSPs)
scaffold1302 (133-247)||(854-968)
[»] chr5 (2 HSPs)
chr5 (275-319)||(15368136-15368180)
chr5 (275-319)||(37121478-37121522)
[»] chr3 (3 HSPs)
chr3 (275-319)||(52925759-52925803)
chr3 (275-319)||(25129670-25129714)
chr3 (280-316)||(35253557-35253593)
[»] chr8 (2 HSPs)
chr8 (275-319)||(4950378-4950422)
chr8 (275-319)||(41614737-41614781)
[»] chr6 (2 HSPs)
chr6 (279-315)||(19601714-19601750)
chr6 (275-319)||(29240600-29240644)
[»] chr2 (1 HSPs)
chr2 (275-319)||(7629755-7629799)
[»] chr1 (1 HSPs)
chr1 (275-319)||(20721063-20721107)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 25126485 - 25126714
Alignment:
Q  18 cattcaaaatgaggttggcgtagaacagaacccctttgacacaagaataattctttgatcatttggcgctgctcttctggtagatttgaagaggtatttc 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25126485 cattcaaaatgaggttggcgtagaacagaacccctttgaaacaagaataattctttgatcatttggcgctgctcttctggtagatttgaagaggtatttc 25126584  T
Q  118 tgtaaatcttgatactgcgcaagactgttgcattttggataatatatttggtgaattgaagctcactttcgttgcctccataatttataaaagagaacat 217  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25126585 tgtaaatcttgacactgctcaagactgttgcattttggataatatatttcgtgaattgaagctcactttcgttgcctccttaatttataaaagagaacat 25126684  T
Q  218 ttgtagctgtgatgaaaagcattcggggac 247  Q
    ||||||||||||||||||||||||||||||    
T  25126685 ttgtagctgtgatgaaaagcattcggggac 25126714  T

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Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 270 - 437
Target Start/End: Original strand, 25127852 - 25128019
Alignment:
Q  270 caatttctagaatcaattttgacgcctccaaaaatggaaccaaacatacagaatcactattcattgatgagtgaattaaaaagaaactctaacgagagac 369  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25127852 caatttctagaatcaattttgacgcctccaaaaatggaaccacacatacagaatcactattcattgatgagtgaattaaaaagaaactctaacgagagac 25127951  T
Q  370 aacaatgatcagagtgagaatttcattaaaaaagaaataatgggagtgagttgttacctttgtgatga 437  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  25127952 aacaatgatcagagtgagaatttcagtaaaaaaaaaataatgggagtgagttgttacctttgtgatga 25128019  T

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Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 7015599 - 7015746
Alignment:
Q  100 gatttgaagaggtatttctgtaaatcttgatactgcgcaagactgttgcattttggataatatatttggtgaattgaagctcactttcgttgcctccata 199  Q
    |||||||||||||||||||||| ||  |||   |||||||||  ||||||||||||| || ||||||||||||||||||||| |||  ||||||||||||    
T  7015599 gatttgaagaggtatttctgtagatggtgacgttgcgcaagagagttgcattttggacaacatatttggtgaattgaagctcgcttaggttgcctccata 7015698  T
Q  200 atttataaaagagaacatttgtagctgtgatgaaaagcattcggggac 247  Q
    ||| |||||||||||||||||||| |||||||||| ||||| ||||||    
T  7015699 attaataaaagagaacatttgtagatgtgatgaaatgcattgggggac 7015746  T

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Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 7030957 - 7031104
Alignment:
Q  100 gatttgaagaggtatttctgtaaatcttgatactgcgcaagactgttgcattttggataatatatttggtgaattgaagctcactttcgttgcctccata 199  Q
    |||||||||||||||||||||| ||  |||   |||||||||  ||||||||||||| || ||||||||||||||||||||| |||  ||||||||||||    
T  7030957 gatttgaagaggtatttctgtagatggtgacgttgcgcaagagagttgcattttggacaacatatttggtgaattgaagctcgcttaggttgcctccata 7031056  T
Q  200 atttataaaagagaacatttgtagctgtgatgaaaagcattcggggac 247  Q
    ||| |||||||||||||||||||| |||||||||| ||||| ||||||    
T  7031057 attaataaaagagaacatttgtagatgtgatgaaatgcattgggggac 7031104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 7064585 - 7064732
Alignment:
Q  100 gatttgaagaggtatttctgtaaatcttgatactgcgcaagactgttgcattttggataatatatttggtgaattgaagctcactttcgttgcctccata 199  Q
    ||||||||||||||||| |||| ||  |||   |||||||||  ||||||||||||| || ||||||||||||||||||||| |||  ||||||||| ||    
T  7064585 gatttgaagaggtatttgtgtagatggtgacgttgcgcaagagagttgcattttggacaacatatttggtgaattgaagctcgcttaggttgcctccgta 7064684  T
Q  200 atttataaaagagaacatttgtagctgtgatgaaaagcattcggggac 247  Q
    ||| |||||||||||||||||||| |||||||||| ||||| ||||||    
T  7064685 attaataaaagagaacatttgtagatgtgatgaaatgcattgggggac 7064732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 7060143 - 7060250
Alignment:
Q  133 tgcgcaagactgttgcattttggataatatatttggtgaattgaagctcactttcgttgcctccataatttataaaagagaacatttgtagctgtgatga 232  Q
    |||||||||  ||||||||||||| || ||||||||||||||||||||| |||  ||||||||| ||||| |||||||||||||||||||| ||| ||||    
T  7060143 tgcgcaagagagttgcattttggacaacatatttggtgaattgaagctcgcttaggttgcctccgtaattaataaaagagaacatttgtagatgtaatga 7060242  T
Q  233 aaagcatt 240  Q
    || |||||    
T  7060243 aatgcatt 7060250  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 38123796 - 38123836
Alignment:
Q  275 tctagaatcaattttgacgcctccaaaaatggaaccaaaca 315  Q
    |||||||||||||||| | ||||||||| ||||||||||||    
T  38123796 tctagaatcaattttggctcctccaaaagtggaaccaaaca 38123836  T

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Target: scaffold1302 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold1302
Description:

Target: scaffold1302; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 247
Target Start/End: Original strand, 854 - 968
Alignment:
Q  133 tgcgcaagactgttgcattttggataatatatttggtgaattgaagctcactttcgttgcctccataatttataaaagagaacatttgtagctgtgatga 232  Q
    |||||||||  ||||||||||||| || ||||||||||||||||||||| |||  ||||||||| ||||| |||||||||||||||||||| ||||||||    
T  854 tgcgcaagagagttgcattttggacaacatatttggtgaattgaagctcgcttaggttgcctccgtaattaataaaagagaacatttgtagatgtgatga 953  T
Q  233 aaagcattcggggac 247  Q
    || ||||| ||||||    
T  954 aatgcattgggggac 968  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 15368180 - 15368136
Alignment:
Q  275 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 319  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||    
T  15368180 tctagaatcaattttggctcctccaaaagtggaaccaaacataca 15368136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 37121522 - 37121478
Alignment:
Q  275 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 319  Q
    |||||||||||||||| | |||| | |||||||||||||||||||    
T  37121522 tctagaatcaattttggctcctctacaaatggaaccaaacataca 37121478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 52925759 - 52925803
Alignment:
Q  275 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 319  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||||    
T  52925759 tctagaatcaattttgactcctccaaaagtggaaccgaacataca 52925803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 25129670 - 25129714
Alignment:
Q  275 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 319  Q
    |||||||||||||||||| |||| |||| || |||||||||||||    
T  25129670 tctagaatcaattttgacccctcgaaaattgaaaccaaacataca 25129714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 35253557 - 35253593
Alignment:
Q  280 aatcaattttgacgcctccaaaaatggaaccaaacat 316  Q
    ||||||||||| | |||||||||||||||||||||||    
T  35253557 aatcaattttggcacctccaaaaatggaaccaaacat 35253593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 4950422 - 4950378
Alignment:
Q  275 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 319  Q
    |||||||||||||||  | ||||||||| ||||||||||||||||    
T  4950422 tctagaatcaattttagcacctccaaaattggaaccaaacataca 4950378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 41614781 - 41614737
Alignment:
Q  275 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 319  Q
    |||||||||||||||| | ||| || |||||||||||||||||||    
T  41614781 tctagaatcaattttggctcctacacaaatggaaccaaacataca 41614737  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 19601750 - 19601714
Alignment:
Q  279 gaatcaattttgacgcctccaaaaatggaaccaaaca 315  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  19601750 gaatcaattttgactcctccaaaagtggaaccaaaca 19601714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 29240600 - 29240644
Alignment:
Q  275 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 319  Q
    |||||||||||||||||  || |||||| ||||||||||||||||    
T  29240600 tctagaatcaattttgattcccccaaaagtggaaccaaacataca 29240644  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 7629799 - 7629755
Alignment:
Q  275 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 319  Q
    |||||||||||| ||| | ||||||||| ||||||||||||||||    
T  7629799 tctagaatcaatcttggctcctccaaaagtggaaccaaacataca 7629755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 20721063 - 20721107
Alignment:
Q  275 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 319  Q
    |||||||||||||||||  ||||||||| |||||| |||||||||    
T  20721063 tctagaatcaattttgattcctccaaaagtggaacaaaacataca 20721107  T

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